Array 1 5277-5915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSY02000030.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0367 NODE_30_length_57702_cov_28.369014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5277 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5338 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5399 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5460 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5522 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5583 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5644 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5705 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5766 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5827 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5888 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22667-25563 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSY02000030.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0367 NODE_30_length_57702_cov_28.369014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22667 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 22728 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 22789 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 22850 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 22911 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 22972 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 23033 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 23094 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 23155 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 23216 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 23277 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 23338 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 23399 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 23460 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 23521 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 23582 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 23643 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 23704 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 23765 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 23826 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 23887 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 23948 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 24009 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 24070 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 24131 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24192 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 24253 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 24314 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 24375 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 24436 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 24497 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24558 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24619 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 24680 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 24741 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24802 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 24863 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 24924 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 24985 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 25046 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 25107 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 25168 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 25229 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 25290 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 25351 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 25412 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 25473 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 25534 29 96.6 0 ............T................ | A [25561] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //