Array 1 176442-176939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDV010000003.1 Lactiplantibacillus pentosus strain 1.2.7 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 176442 28 96.4 33 ..........T................. TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGG 176503 28 100.0 33 ............................ TGTGATGCTGCAAGGCTGGCGGTTCAAGTTCCA 176564 28 100.0 33 ............................ CTTCAATCTGTGGACGTTAACGATCGCCCAATT 176625 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 176686 28 92.9 137 ..T..........G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 176851 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 176912 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 7 28 93.9 50 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGATCAAACATTCACGCCTATTAAACGTTGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGT # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.77, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12300-12930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDV010000036.1 Lactiplantibacillus pentosus strain 1.2.7 assembly_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12300 36 100.0 30 .................................... CGGAGTGGCCTTTTTATTTATTTGATTGCA 12366 36 100.0 30 .................................... TGATGTTTTAGGCGACTTTACCGTGTATAA 12432 36 100.0 29 .................................... AAGGGCTTGTTTTCCAAGACGTCAGGCTT 12497 36 100.0 30 .................................... CAGTCATTTTCGTTTGAGCAACGCGAATTC 12563 36 100.0 30 .................................... CAGTCATTTTCGTTTGAGCAACGCGAATTC 12629 36 100.0 30 .................................... TAAATAAGTGTTGACAAAGGATATCAGAAA 12695 36 100.0 30 .................................... GTCGGAGGCGTACAAGAAGCGTGTGGCTGG 12761 36 97.2 30 ..........A......................... TGGTGTTGAATTACAAGGTGCTGGTAAGTA 12827 36 100.0 30 .................................... CAAGTTTAACCATGAAAGTATTTCTGATGA 12893 35 88.9 0 ........................-...G..T..T. | GGC [12913] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGCATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATCCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGCACATTAAAATCCGGTTATAAAAAATCG # Right flank : CTAGTGGCCGTTTTTAATTTCGTGATGTAACTAGATTTATAGATGTTCATTAGGAGTTTCCAAATTAGACCCTGTAACAGGAATAATAGAAAATGGCAGTGACACAACTTAACGGTAACGCCGAAAGCAGGTAAGGAAAATGAGTTTAAGAGCCAGCAAACGAAAGTCCGGTTTGCGGCTAGTTTGTCAAAGGATAAGACCGATAGTGAGTTAACTAAGAAAGATAACGATTATACCTGGTCAAATAAGATGACTAAGGGCGATAAACCATCAAATGATGTGGCTTATCATTCAGAAAAGGACCCGGACTTGATTGTGAAAAAGGTTGAAACACAAGATGGTAAGTTAGCTGACAACGTGGCCAATGCTAATATTATCAACGCCAAAACCGTTCCTTTCAACATCTTTAATCAGTATAACAATTTAGGTGAAACCCAATATATGACTGATACCGACGGATAAGGCCGATAGTGAGTTAACTAAGCAAGGTCAGACTTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 76200-76824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDV010000007.1 Lactiplantibacillus pentosus strain 1.2.7 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 76200 36 100.0 30 .................................... GTGTATAACGTTTCAGATTAAGCTACCACT 76266 36 100.0 30 .................................... GATCTAAGTCATGTCGCGGGGTGGTTTTTC 76332 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 76398 36 100.0 30 .................................... TGGCGCTGAAGCTGCGGAACTGGTTCACGG 76464 36 100.0 30 .................................... TAATTATTTGCAAAGTGGCTGGTGTAGACC 76530 36 100.0 30 .................................... TTTCCCGTTCAACATAGAAGTGTAAAGTTT 76596 36 100.0 30 .................................... CCTTGCTGACGGTAAACAGCGCACCAGATA 76662 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 76728 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 76789 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.7 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGAATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : TAACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 32206-32843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDV010000031.1 Lactiplantibacillus pentosus strain 1.2.7 assembly_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32206 28 100.0 33 ............................ CATTGGGCAGTTCGCTGGTTTAACATCTCAATA 32267 28 100.0 32 ............................ CAATATGATAAGGTCGACAACTACCGCCACGT 32327 27 96.4 33 .....................-...... TGACTGATGTACGAGGTATCAAGCGAATTGTTA 32387 28 100.0 33 ............................ CTTGTCCAATCAATAAACCTATCGTATCAGTTT 32448 28 100.0 34 ............................ TGGAGGACAAATAGCCTCACTGTTGCTTGGCCGC 32510 28 100.0 33 ............................ TGAGTGACGGTAAATTAAACCGCGCAACTATCA 32571 28 100.0 33 ............................ TATCAGCGCTAACTAATGCAAACCGCTGCTTGG 32632 28 100.0 33 ............................ TGTAAGGGTCGTCAGTTTGTGAATAATCTATCA 32693 28 100.0 34 ............................ CCAAATTTCGCCAACCATTGCGACGATTGCTCGC 32755 28 78.6 33 ..A.C..........A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 32816 28 78.6 0 .....T....C..G..TA........T. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 95.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : AATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGCGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTGGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGTGCGATTCGTTAAATCTTGAGAAGCGATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACGCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //