Array 1 218853-219796 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QAQC01000004.1 Salmonella enterica subsp. enterica strain CFSAN058539 SRR6919745_NODE_4, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    218853	    29	 100.0	    32	.............................	CTGGCGACCGACCGGGCAACGAAACGGGCTGC	
    218914	    29	 100.0	    32	.............................	CCAGGACACCTCACGCTTAACGTTGAATTCAG	
    218975	    29	 100.0	    32	.............................	TTTGTTTTTGAGCTGAAGACGCTTCCACATCA	
    219036	    29	 100.0	    32	.............................	ATCCTGATACAGGCTTATCAGTGGCTCTTCTT	
    219097	    29	 100.0	    32	.............................	CCAGACACGGAGCCGTGCATTTCGGGGTAGAG	
    219158	    29	 100.0	    32	.............................	ACAGGTATTGATGTTACCGGATTATCCACTGC	
    219219	    29	 100.0	    32	.............................	TGATAAAGAAACACTCTCTTTCTGATAAATAT	
    219280	    29	 100.0	    32	.............................	CACCAGTAGAGCAAATCGCTGTTGCGGCCAAC	
    219341	    29	 100.0	    32	.............................	AATCCAGTCAAACATAACCATATCCTTATCAA	
    219402	    29	 100.0	    32	.............................	CAGTTGCTCAATGAGGAGATTAACAGCGACGT	
    219463	    29	 100.0	    32	.............................	ATTTCGAGTACCAGTTTAATAACGGTTAATAT	
    219524	    29	 100.0	    32	.............................	CAGATTAACCCTGTGGTCACAACACCCCTGAT	
    219585	    29	 100.0	    32	.............................	GTGACATTTGTTACCGACACGGAAGAACAGGA	
    219646	    29	 100.0	    32	.............................	GATTTCCGCGACGTGCTGCCGACGCGTCTGGA	
    219707	    29	 100.0	    32	.............................	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC	
    219768	    29	  86.2	     0	............T............G.TA	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT
# Right flank :  ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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