Array 1 777846-773702 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTLY01000002.1 Paenibacillus sp. RU4X, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================ ================== 777845 33 100.0 35 ................................. TTGTCGGGAGTAAAGACGAGGTTGCTTTCAAAATA 777777 33 100.0 35 ................................. GCGTTCTTGGGCCTCAAAAACTATTGAAATGGGTT 777709 33 100.0 37 ................................. CCGTCCGTGTGTCCCTTTGGGACAGGCTGACGGTCAG 777639 33 100.0 33 ................................. AACACTCTTCAACAGCCTTGACCCCTGACTGTA 777573 33 100.0 36 ................................. TGCTGTTGGAACAGAATGATTGCATTTTTGAGGTTT 777504 33 100.0 33 ................................. GGCTTGATCGTCCCGAAATTGCGCCGCCTCTTC 777438 33 100.0 34 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCG 777371 33 100.0 36 ................................. CGCAAGGCGCTGCCAGCTACCAATTGGATTTTGTAG 777302 33 100.0 34 ................................. CCCCTCTTAGATCGGCAATTCGTAATCTGTCGCC 777235 33 100.0 33 ................................. CACGGAAATGCTGGCGAATGCGATTAAGCATGA 777169 33 100.0 33 ................................. CGGATCATCCGGGGCTGTCTGCTCCCTCCCTCC 777103 33 100.0 33 ................................. GCTCGAAACCAACAATGACACCATCCCGCCAGG 777037 33 100.0 37 ................................. TTTTTAATCAATGCGTTCGCTGGGTTGATGGAGAACA 776967 33 100.0 33 ................................. GCCCGTATATCCCGATTGAAAAGGCGGATAACG 776901 33 100.0 34 ................................. AACATTGACCTGCCTATGACCTACGTCGATGGGG 776834 33 100.0 33 ................................. CAGTATCCCCCGAACTCCCCGAACGGGATCGAC 776768 33 100.0 35 ................................. CGTGGGAATTTGTTGTCTCCGAAATAGAGGAAATC 776700 33 100.0 35 ................................. ACCCAACAAAAACCCACCAATACGCTATTATCATT 776632 33 100.0 33 ................................. GGCAGTTGGTGGCTTATCCGGCTGTGGAAAAGG 776566 33 100.0 33 ................................. GGCAGTTGGTGGCTTATCCGGCTGTGGAAAAGG 776500 33 100.0 33 ................................. CTCGTTGGTGAAGTCTGCCTCCACATAATGCAC 776434 33 100.0 35 ................................. TTTCTAAGACCTACAGCGAATTCCTGAACAAAGGC 776366 33 100.0 34 ................................. ATCCAGACAAATACTTGATTTTGAAAGAAGTGCT 776299 33 100.0 34 ................................. ACTACACCTTACGTAATACGATTTTGTATGCCTA 776232 33 100.0 36 ................................. CGCGTGTCTATGTACAATTCCGTCACGCGCCCGAGT 776163 33 100.0 34 ................................. GCCGTCCGGCTCGTGATGCTGATAATGGCATCCG 776096 33 100.0 36 ................................. GTTTTTACTCGCAGGCGATGTCATCCAGGGCAGGCC 776027 33 100.0 35 ................................. GCCACAGAAAACACACGAACCGCGTCCTGGTCCAA 775959 33 100.0 34 ................................. AAGCTCGGCGACCTGATCGTCACGACGCACATCC 775892 33 100.0 34 ................................. GGCATTATCGGCGGGGAGCTATTGCAGAAAGGAA 775825 33 100.0 33 ................................. CAGCAATGGTAAAGAACATCGCATCCATCCTCG 775759 33 100.0 34 ................................. ATCGTTACTTGGAGCAAAGGTGGCATCGGCTACC 775692 33 100.0 33 ................................. TCCACCAGTTCCCGAAGGGCAAACTCTGCTTTA 775626 33 100.0 34 ................................. ACATTTTCGGCGGTGACACCGTGACGGAGAAGTT 775559 33 100.0 35 ................................. CCATCAAGATACCGAATACCTGAACACCCTCTATC 775491 33 100.0 36 ................................. CTACAATCAGCCTTGGTTATTCCCTGGCTGATGTGG 775422 33 100.0 36 ................................. AGGCAATGTAATTCGAATAGTTTTATCCGAAAACTC 775353 33 97.0 35 A................................ CGGAACACGGTTTACCATCCGACGTGTCAAAGCTA 775285 33 100.0 35 ................................. AATCCTATCAACGATGAATTGGACCAAATTGAAGC 775217 33 100.0 36 ................................. AAAGAGGTGTGTTGAAATGGGTAACGGTATTCCTAC 775148 33 100.0 34 ................................. AATACAGGTGCCTGCTGATAATGATCGGATGGCT 775081 33 100.0 34 ................................. TGCTGTCTTTGTGGTGATACGCTTGTTTTCTGCA 775014 33 100.0 36 ................................. TTCGAAATGGAAATCTATTCTGATGCAAAGGTCACC 774945 33 100.0 35 ................................. GTCCTCATGGGCATTGAGAGCATCCGTCACCTTGA 774877 33 100.0 33 ................................. CCGGTCCCCTCTCGATCTACCAAAATTGTGCAG 774811 33 100.0 35 ................................. CATTCGTACAGGACGGTTTCACTGGCGCCGACCAT 774743 33 100.0 36 ................................. TGATAAAGTCCGATGAGGGCAGTTGCCAGATTGACC 774674 33 100.0 35 ................................. GCTGCTGGCGTCAATCCAATTCGCTGCGGATTACC 774606 33 100.0 33 ................................. CCTGTAATCGTCTTTGATGGTATGGGCCTGCAT 774540 33 100.0 36 ................................. CTTGCTCCGCTCAGGATCAGAAAGGCTTGCGGGCTG 774471 33 100.0 34 ................................. CGAATCGCCGGCTTCGTAAGCGACAAGCGAGAGG 774404 33 100.0 35 ................................. AGCCAAATCAACCCCTCCCTTTACCCCGAAATTGC 774336 33 100.0 36 ................................. GATTTGTCGAGTGCTGTATCCTTGCTCTCGGTGCAT 774267 33 100.0 35 ................................. TAATTACAAATATTACTATGCTCCTTACAAGGATC 774199 33 97.0 35 ....T............................ CGGCTCGAAATGATCTGGACGAGCTCAAGACTACG 774131 33 100.0 35 ................................. CTACTGCTGCGGAGCGCGGAATTGCCTATGAGAAA 774063 33 93.9 33 ...............C...........A..... GTTTCGTTGACCACGCGGGCGGGCAGCGTTAGA 773997 33 90.9 34 ...........C...................TG CGTACCCGAAGTCGAGCCCGCGTTTAATCCGGTC 773930 33 87.9 34 ...........C......T....A........C AACATCTATGTCACCGAGGGCGGTGTGCTAATGA 773863 32 81.8 96 ..T....T.........A..-...A.......C TGATGGCTATTGTCAGAACGGTCCTAAAGCCGGATCACTCTCCGTTTAGGCATATTGCGTTTAAACTGCCCCCACACAAATGACACCATTAAAAAA 773735 33 81.8 0 A.........T...C..........T..A...C | A [773719] ========== ====== ====== ====== ================================= ================================================================================================ ================== 61 33 98.9 36 GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT # Left flank : CCGCATATTGTTGAACCGCTAGAAGGTGGTCATGGACTGACTCGCGCTGACCGTCCATTTGCCGGATATGAGCTACAAATTCTGGATGATTGGTAAGTTCTGAATTATTCGGCATCCTCTTCCCTCCTAGAAATACAGGACCAAAGCACCTAATTAAAAGTTATTACGAGAACTAAGGTTCGACAATCGCACACACAATCCTTCTTAAATTATGGAAAATATTCCAATAGGGATTTGGATGTGATTTAATCCTGGTTAAGATTGAACATTCCGTTTGGCAATAATAATTTTGTTCCATTATGATAGGGGTGCAATCCTTGTGCGAATGGCAAGCTCCCATAAAAAGCCGGGGAGATTCGCACCTCGAAACTTGTCGAATGAAGTTCAATTTCATAAAAAAGTATTCTCGTCAATCTTTGATACATACCTATTTTGATTGCAAAATTCGCAAAATCAGCCATTCTCATACCTTTCCAGAAAGGTTCGAGGCTGTTTCCGCT # Right flank : TTGAGTGGGTTCGTTAACTAGCTCAATCATCCCTTTACGGAAGTGTTTCACCAAAAAATGTTGCATCCCCGTCACTCCCCGCCCTCGCCCCCATACCTGCTCCGCAGCCGCCGCACCGCATCCATCAGCTCCCGCCCCGCGAGCTTCTCCGCCTGTCCGTACAGCGGCTCCCACAGAGCCATCCACTCCCGCCGCTCCGGCTCCTGCAGGTCGACGATGTTCATCAGGCGGCCGCTCCGCATTTCCGCCAGCTCCTTGCGGCTCATTTCCCGCGCGCTCTCGTTGGCCCAGCCGGTCGTCTCGCGCATCGCCTCCTGGATGATGGCCTGAACGTCGGCCGGCAGGCTTTCCCAGAAGGAGCGGTTCATCAGCACGGCATACCCGAGATAGGCGTGATTGCTGACCGTCATGTATTTTTGCACCTGGTAGAACTTCTTGCTGTAAATATTCGTGATCGTATTCTCCCCGCCGTCGACCCCTCCGCTCTCGTAAGCCTTGTA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 786522-789247 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTLY01000002.1 Paenibacillus sp. RU4X, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 786522 33 100.0 33 ................................. TTACGCCGGCTTGTGGACAAGCCGGCCAGCCGG 786588 33 100.0 34 ................................. GTCATCGCTCAGCACCTCATTGATCGCGCCTTCC 786655 33 100.0 34 ................................. TGATTGTGAAATTGCTCGGGGTCATACGGAACAG 786722 33 100.0 36 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCGAA 786791 33 100.0 33 ................................. GGAAGCAATTGCTGTCTTCCAGCGGATCAAGCA 786857 33 100.0 34 ................................. TCGAAAAGGTGTTCCCGTTTGAAATCAACTTCGC 786924 33 100.0 35 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCGA 786992 33 100.0 34 ................................. TTACGCCGGCTTGTGGACAAGCCGGCCAGCCGGG 787059 33 100.0 35 ................................. CTGCCTGGAGAAAAGATAGACTGCTTGCAACTCCT 787127 33 100.0 36 ................................. AAAGTCACCGTCGAGTACAACATGGTCGCTTCCCAC 787196 33 100.0 34 ................................. GAAGTCCAGGTTGTTGATCAGGTTGAAAATGTCT 787263 33 100.0 34 ................................. AAGGTGCCGGGTCTTGATCTCTGCCACCTCAGAT 787330 33 100.0 33 ................................. CCATAAGGAGGAACAGAGATGAAATTGACAATG 787396 33 100.0 33 ................................. ATGAGGTAGAGGTTTCGCTCATACGCAGATAGT 787462 33 100.0 35 ................................. TAGAGGCGGAGAGAGCCGAGCATAACACCACTCGG 787530 33 100.0 34 ................................. GCCGATGCATTACGCATAGCCGATGAAGCACTCG 787597 33 97.0 34 ..........A...................... CGGATCCGCAAGAGCAAGAGCCGGAGCCGATCGG 787664 33 100.0 34 ................................. ACCTTTGGCCCAGTCCAAAAGCTTGGTAGATGGA 787731 33 100.0 34 ................................. CGCAATTAAGCTCTGGAAGGATACGGATGTTTCG 787798 33 100.0 35 ................................. CTTGCTGTAGGCGCTCGATCTCTCCCTGCTGGCGC 787866 33 100.0 34 ................................. AGGAACACAAGACTTACCGAGGCGCGGCCAGATT 787933 33 97.0 34 ..............................G.. TGGAGACGTTGAACCATCGCGGGGAAATCGTCGC 788000 33 100.0 34 ................................. ATCAGAAAGTACCGAAGCGCAAGAAGGGAAAGAA 788067 33 100.0 37 ................................. AAGACCTATTGGGACTTAGATAAACTCATTGACAAGC 788137 33 100.0 36 ................................. TGGCGGCGGTACTGATCCTGGCGGCGGCACCGATCC 788206 33 100.0 35 ................................. AGAAACACGACCGTACCGATGCCCTGACTCGTCCA 788274 33 100.0 34 ................................. CAAAATGGTAATGTTTGTAACGCGCGGAAATCTG 788341 33 100.0 34 ................................. ATCGTCGCTCAGCACTTGTTGAACGGTATAGTCG 788408 33 100.0 33 ................................. CCGCGAGTTTACGGTATGGTGCGGCGGGTGCCG 788474 33 100.0 35 ................................. AGAAACACGACCGTACCGATGCCCTGACTCGTCCA 788542 33 100.0 36 ................................. TCCGGTACGTCGCGCTCCAGAATATCGCGTAGGCGC 788611 33 100.0 34 ................................. ATCCGGAATATCGAAAAGCACATGGAATGGGGCA 788678 33 100.0 33 ................................. GACCATTTGACGCATAAACGGCAAAAGTATGCC 788744 33 100.0 34 ................................. CTACCGAAGGACGAACTCGCAGCCTACAACGACA 788811 33 100.0 36 ................................. GCAGAGGATACCGGCTACAAGGTCCAGAAGCGAAAC 788880 33 100.0 34 ................................. AAAAGGAAAAAGGGTATACGCCGATTGCCCATGT 788947 33 100.0 33 ................................. CTTGATTCTGGGCAGCAGAAAGCCAGAGGCGAA 789013 33 100.0 34 ................................. TTTTGAGAGGGGTAGCCCATGAGTAACGAACAGC 789080 33 100.0 35 ................................. TTGCCATAGACGGCATCTGACAGGAGCCAGATGAC 789148 33 100.0 35 ................................. ATCATTTGGGTGATCGTCAATAATATCGGTCTTGT 789216 32 84.8 0 ..............-......AC...A.....C | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.5 34 GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAT # Left flank : GGAGGAGGACAACGGAGTGCTTGTATTGATCACCTACGACGTAAGTACCATTACCAGTGATGGACGCAGGCGTCTTTCGCAGGTAGCGAAAAAATGCCAGGATTACGGACAGCGGGTGCAGAACTCGGTGTTTGAGTGTATCGTTGATTCGACCCAATTTCGCCGCCTTCGGTTTGAACTGGAGGAGCTGATTGACCCCGAAACAGACAGCTTGAGATTTTACAATATAGGCGATAAATACAAAACAAAGGTTGAGCATATCGGGGCAAAACCTGCTTACGATATGGATAGTCCGCTAATTCTATAGGAGCAGTACTTTGGTGCGAATGGGAAGCTCCCATAAAAACCTTGGGGGATTCGCACCTCGAAAACTGTCGAAAACGATCTATTTTCGGATAAGTGAAATGTAGTCAAGTATCGGAGCATACCGTATTTATTTGTTTTAAGGCGAAATGAACTTTTTCCATACCTTTATTAGATGGTTTTAGGTGATTTTTGCT # Right flank : CTGAGACGGGTGAAAAAATCCCCCGGCTGTGCTAAACTACAGGAATTGCATGTAATTTGGGGGGTAACAAAGCTTTATGCTTATCATAGGAATCGCCGGCGGCACCGGCTCGGGCAAGACGACCGTCGCCCGCTCCGTCATCGACCGGATGGGACCGGGCAAAGTGACATTCGTCTCGCAGGACAACTATTATAAGGATCACTCGGAACTCAGCATGAGCGATCGGGAGAAGATCAACTACGATCATCCCTTCGCGTTCGACAACGAGCTGCTCATCGAGAATCTCAAAACGCTGAAGCAGGGGCTGAGCGCCCAGGCTCCCGTCTACGACTTCACGGTCCACGCGCGCCGCACGGACAAGTCCGTCGAGCTGAAGCCGAGCAATATCGTCATCATCGAGGGGCTGCATGTCCTCTCGGACGAGCATCTGCGCGAGCTGCTGGACATCAAGGTGTTCGTCGACACCGACCCGGATGTCCGCATCCTGCGCCGCGTGCTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //