Array 1 1561235-1561446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041650.2 Streptomyces sp. RLB1-8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1561235 29 82.8 32 TC.TC.................C...... GCCAAGCCATCGACGGGGAAGGGGAGTCGGCT 1561296 29 100.0 32 ............................. TCGCGTTTGGTGACGTATGCGCTGATGTATTC 1561357 29 96.6 32 .......................T..... AGCACCGCCGCCGACCCGTCCGCGTGCGGCAC 1561418 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : GACTCCACGGCCGGCGCGGCCTCAAGGCGGGCCAGCCAGGCGCGCACGACGTCATGCAGCGGGGTGAGACTGTAGGAGTGCCGGGAGTCCTCCAGTGCCCGCGACCAGTCCTGCTCGAACGCCGGCACCCAACTCTCAGCCCGGGCACTGACACGGAGCTGAGCGAGCAGCTGCGCGGCCGCGGTCGGCGCGATCGGCGCCGGCGGGACAGCCGCGTGATCGGGCTGGGCACTCATCGCCACCTCCAGGCAGGTCCTGACGCCAACGGTACGCGCGCCCCGCGCCGCCATCCAGACGATCCGTCAAAAACTGCTGGTCACCACCAGCGTCGGGCTGGCCCCGCCCTTCATCGGCTGCCGCCAGCACTGAGGATTACAGCGAGGACAGCGACCAGGGCAGCCACGGTTGCAACGCCGGCAGTGACCGGACCGTTCAGCGACGGACGTCGGTGAACCAGGGAGGACTACGGGCCGCCGGTCGGTCCCGCACAGCTGTACCCG # Right flank : GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTCGCCCTCACCGCACACGCCTTGGGGAGCGCAATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCCTCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1793218-1792794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041650.2 Streptomyces sp. RLB1-8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 1793217 29 79.3 32 C..AC......CTG............... GAGGGACGCGATGAGCGGGCCTGCCACGCGCC 1793156 29 96.6 32 .......................A..... TCTTCTGCTACACCGTCGGTTTCGTCCTCCTC 1793095 29 96.6 33 ............................A GGCGGCAGCAAAGCCGCGCGAGTTGAAGCTTCG 1793033 29 96.6 32 ........T.................... CCGGACCTGATCCTTCACGTCCTGCGCGATGC 1792972 29 100.0 32 ............................. GCCATCACGTCGATGTCGGCGACGGCGGCGTT 1792911 29 96.6 60 .................T........... CCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTC 1792822 29 65.5 0 .C....A....A..C..CTT..G....GC | ========== ====== ====== ====== ============================= ============================================================ ================== 7 29 90.2 37 GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : GGAGTCCGGGGATCTCCTCGCCCGGGCCGTAGAAGTGCCGGAACCGCTGCCAGGGGACCTCGTCGTACCTGAACCCGTCCTTGACCTCCCGCGAGATCGCGCCCACGGCCGTCCGTACGTCGCAGTCCGTGCCGACCCACCGTTCCGGCCAGCCAGCCCAACGGTCATCGTCCATGGCTTGGCCTTCCAGTTCACCGACAGCATCCGAACCCCGGGAGTTTAACGACCGGTGATCAAGAGGCGGACCGCTTCTGCCGCACTCCGGTGGCACCGCACCACAGCGACGTCATTTCTCGTTCTCGTGAGCATCTGCAGCACTCAAGATCGCCATCTGCTGTCCAAACGCTGCTACTTCACGTGAACGAAGCCACCGGCCGGCTCACCCCCGCCTGCGCAGGGAGGACCGAAGAACGAAACGGCAAGAATTCCGGGACGACGGCTCACCCCCGCCTGCGCGGGGAGGACAGGGTCTTGGGAGGATCACTCTTTGTACCCGGCGG # Right flank : AATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCATCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCATCCCTGGGGGGACCATGTCGTACAACCAGCCGCCGCCACCGCCCGGATACGGGCCGCCGGCCGCCCCTGCACAGCAGCCGCCCAGGCCG # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:-0.23, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //