Array 1 36173-33398 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXX02000038.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0046 NODE_38_length_45126_cov_14.059668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36172 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 36111 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 36050 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 35989 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 35928 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 35867 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 35806 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 35745 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 35684 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 35623 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 35562 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 35501 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 35440 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 35379 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 35318 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 35257 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 35196 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 35135 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 35074 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 35013 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 34952 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 34891 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 34830 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 34769 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 34708 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 34647 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 34586 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 34525 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 34464 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 34403 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 34342 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 34281 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 34220 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 34159 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 34098 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 34037 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 33976 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 33915 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 33854 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 33793 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 33732 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 33671 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 33610 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 33549 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 33488 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 33427 29 96.6 0 ............T................ | A [33400] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8413-7774 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXX02000107.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0046 NODE_107_length_13691_cov_14.468298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8412 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 8351 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 8290 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 8229 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 8167 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 8106 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 8045 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 7984 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 7923 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 7862 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 7801 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //