Array 1 129519-126558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCA010000008.1 Salmonella enterica strain F2-27 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129518 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 129457 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 129396 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 129335 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 129274 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 129213 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 129152 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 129091 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 129030 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 128969 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 128908 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 128847 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 128786 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 128725 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 128664 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 128603 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 128542 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 128481 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 128420 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 128359 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 128298 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 128237 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 128175 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 128114 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 128053 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 127992 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 127931 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 127870 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 127809 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 127748 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 127687 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 127626 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 127565 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 127504 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 127443 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 127382 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 127321 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 127259 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 127198 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 127137 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 127076 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 127015 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 126954 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 126893 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 126832 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 126771 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 126709 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 126648 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 126587 29 96.6 0 ............T................ | A [126560] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147151-145778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCA010000008.1 Salmonella enterica strain F2-27 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147150 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 147089 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 147028 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 146967 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 146906 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 146845 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 146783 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 146722 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 146661 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 146600 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 146539 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 146478 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 146417 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 146355 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 146294 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 146233 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 146171 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 146110 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 146049 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 145988 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 145927 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 145866 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 145805 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //