Array 1 42289-42744 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOV01000009.1 Escherichia coli strain MOD1-EC5465 MOD1-EC5465_9_length_165784_cov_75.9899, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42289 29 100.0 32 ............................. GCTGATGCGGTTCTATCACCACCACAAATTAT 42350 29 100.0 32 ............................. CAAATACGCGCGAGTGGCTAACCTGGAATCAT 42411 29 100.0 32 ............................. GCGCGGACGATAATCAGGGGCAGGCAGGGCAC 42472 29 100.0 32 ............................. AGGTATATGAAATTGAAGAAAGCTGCCCCATC 42533 29 100.0 32 ............................. GAAATCCAATATTAACGTGGTGTTTTCAAAAC 42594 29 100.0 32 ............................. CGTTTAGCTCCGCAATGCTGGATATCACTGAT 42655 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACGGGCACACTGGCG 42716 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTAATCTCTTTCTAAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATAATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAGTTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGACTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68446-69450 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOV01000009.1 Escherichia coli strain MOD1-EC5465 MOD1-EC5465_9_length_165784_cov_75.9899, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68446 29 100.0 32 ............................. GACTCAGTTTTTCCCTGCTGACCCTCCGAAGG 68507 29 100.0 32 ............................. CCATGCCGCGCCAGCTCTGCGAAACAGCCCGC 68568 29 100.0 32 ............................. GGCTATTGGGTTATTAAAGACCTGAATGAAAC 68629 29 100.0 32 ............................. CGCTACAGCTCCGGGCGAAACAGCGCGAAAAA 68690 29 100.0 32 ............................. ATCCAAAGATAGTCGCCCCGATTGCCAAATTG 68751 29 100.0 32 ............................. ACGGTATTGTTCAGATCCTGGCTTGCCAACAG 68812 29 100.0 32 ............................. GCGGCACTAACGTGATAATCACGATCAATTAT 68873 29 100.0 32 ............................. TGACGGTCCGAAAAAAGTTGGCTGAAGAAATT 68934 29 100.0 32 ............................. GTTATTGCGTTTTCCTCACCTGCGGCGAGTCC 68995 29 100.0 32 ............................. CATTCCGTGCAGCGGTCTGAATAATTGCCGCG 69056 29 96.6 32 ..........................T.. AGTAACGACGAAAAAATACAGGCACGGGCCAG 69117 29 100.0 32 ............................. ATCCCCGCAGGTATCGCGCAGCTATCGATCGA 69178 29 100.0 32 ............................. GGGTATAAAATAATATCGAACGCAGCAGCAAC 69239 29 100.0 32 ............................. GGCAGCGCGAAACGCACGCCGACACGCTGGCA 69300 29 96.6 32 ............C................ CAGCGTTATGCGACGGGTGAAGACGCCGACGA 69361 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAGCCGACATTCATGT 69422 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTTTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //