Array 1 107887-106410 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNV01000003.1 Salmonella enterica strain BCW_4924 NODE_3_length_442184_cov_3.47087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107886 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107825 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107763 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107702 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107641 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107580 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107519 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107458 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107397 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107336 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107275 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107214 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107153 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107091 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106988 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106927 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106866 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106805 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106744 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106683 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106622 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106561 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106500 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106439 29 96.6 0 A............................ | A [106412] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125634-124019 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNV01000003.1 Salmonella enterica strain BCW_4924 NODE_3_length_442184_cov_3.47087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125633 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125572 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125511 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125450 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125389 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125328 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125267 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125206 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125145 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125084 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125023 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124962 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124901 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124840 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124779 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124718 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124657 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124596 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124534 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124473 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124412 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124351 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124290 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124229 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124168 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124107 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124046 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //