Array 1 28512-27040 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJN01000023.1 Moraxella catarrhalis strain 76/204/3 NODE_23_length_28568_cov_18.025773, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28511 28 100.0 32 ............................ TGCTCCCAGCCAATGACAAGGGTGGTAACCGT 28451 28 100.0 32 ............................ TAAAATCATAAAAAACCACTGTGTTTTATGGC 28391 28 100.0 32 ............................ AAAAGGTACAGGCGGTAACGCTGGAAAAAAAT 28331 28 100.0 32 ............................ GCCCACACACGCACACTACCCACTATCCTTAA 28271 28 100.0 32 ............................ GATTATGGCTACCAAATACACATAACCCCCCG 28211 28 100.0 32 ............................ TTGCTAAGCTTGAAAAAGAATTTGGGCGCTTT 28151 28 100.0 32 ............................ CTGCATACACACCTGTGATTTCAATGCTGTTT 28091 28 100.0 33 ............................ GCCAATCTTTGCTGCTCCTGCTGGACTTGAATT 28030 28 100.0 32 ............................ TAAGTGCTGAATTAGAGCGTTATGCGTTAAAA 27970 28 100.0 32 ............................ TGTGTGATTGTCTGTTTAACACACCAGTGATA 27910 28 100.0 32 ............................ CCTGTGGTTACGCCCAGATAACGGATAGATGA 27850 28 100.0 33 ............................ TTCTACAACTGGCACGACACGGATAATCTTAGC 27789 28 100.0 31 ............................ TGTAACAATTTCAATGGACTTGCTTTCAATT 27730 28 100.0 33 ............................ TTGACTGCTACCCTGCCGAGTGCTGTGGGCTAA 27669 28 100.0 32 ............................ TTTAACTCAAGATACGGCAAACAATTAATACC 27609 28 100.0 33 ............................ GTCACTGATTTTGCTAAATCTACCCAGTTTGAC 27548 28 100.0 32 ............................ CCAAAGATCATAGCCTGATCCTTTTGTCGCAC 27488 28 100.0 32 ............................ ATCTACTGTGGGTTTTTGAAAGTCGCTGTTTA 27428 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 27368 28 100.0 32 ............................ TAATAACTCTTGATTTAACTTGTAATTAGGGT 27308 28 100.0 33 ............................ ATAATAGGGGCTTGTTTATATGTCATGCTCATT 27247 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 27187 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 27127 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 27067 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CCCTGAATCCACGCAGAGTAGATCGTCGGACGCGTCAGATTTGTATAAGAGACCGC # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //