Array 1 24712-20715 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRX01000069.1 Streptomyces sp. WAC00469 AA000134-65_WAC00469, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24711 29 100.0 32 ............................. GCGTGGCAGAGGTTGGCGGTCCAGCCGGTGCG 24650 29 100.0 32 ............................. GCCTCCGCAGATGAGGCTATGTGGAAGGCCAT 24589 29 100.0 32 ............................. GCCCGCAGACGGCCGCAGAGGGCCCCTCACAG 24528 29 100.0 32 ............................. GGGCCACAGACGCCAACAGACGCACGCTGGGG 24467 29 100.0 32 ............................. GCACCTCATGCCAGCTAGAGCACGGAACAACC 24406 29 100.0 32 ............................. GTGTTCGCCGAGATCACCGTCGGCGTCCCGCG 24345 29 100.0 32 ............................. GCGCGTTCTTGATGGCGTGCGCCAACCACACC 24284 29 100.0 32 ............................. ACCCGGATCAGGGAGCTGACGGGGCTCGCGCG 24223 29 100.0 32 ............................. CGCTCGATGACCGCCGCCCCGGCGGCCGCCAT 24162 29 96.6 32 ............................C ATCTATCCCACGGTGGCGCTTCAGATGAGCGC 24101 29 100.0 32 ............................. ATGAAGGCTGGCGTTGCTGCCGCTGGTGTTGC 24040 29 100.0 32 ............................. CACACGAGTACCTCCCCACCGGGGAGTACTTG 23979 29 100.0 32 ............................. CGGGAACTGCCGCCGGGCCGGACTCGCCGGGG 23918 29 100.0 32 ............................. GCACCTGGAATCGCACGGTGCGGCCGTCGAGG 23857 29 100.0 32 ............................. GCTTCGTGAGCGGCGGAGCCGATTTCGATATT 23796 29 100.0 32 ............................. GCGAAAGCGACGGTCCGGACATCCTCAGTGGA 23735 29 100.0 32 ............................. ACGCTCCAACTCCTTCGACCCCGGCCCCATGC 23674 29 100.0 32 ............................. CACTAGTCAAGAAGCGAAGACACCAACGGGCA 23613 29 100.0 32 ............................. ACGGTGAGCTGCCGCCCGTCCCAGACCGAGAT 23552 29 100.0 32 ............................. ACACCGGCCGAACTCCGGGCCGACGCAGAGGC 23491 29 100.0 32 ............................. GAGCGGCCGACGATGGTATCTACCGGGCACAT 23430 29 100.0 32 ............................. TCCGGAGTTCCGAACTCGCGGGGGCCGAGAGC 23369 29 100.0 32 ............................. CGATCCCGCGCTTCGACGGGGAAACGGTCGAC 23308 29 100.0 32 ............................. CGATCCCGCGCTTCGACGGGGAAACGGTCGAC 23247 29 100.0 32 ............................. AAGTCGGTGAATCCGCCGCTCAGGTCCTGGGG 23186 29 96.6 32 .......T..................... CACTGGAGTCTGGTATTTCCACGGTGCTGATG 23125 29 100.0 32 ............................. TCATTTACTCGCTGTGGTGCGAGACCAGCGGC 23064 29 100.0 32 ............................. TGGCCCCCGGCACTTTCCCTGCCGGGGGCCAC 23003 29 100.0 32 ............................. CTCATCCCCGTGGCCCTACTCGCCGCTCTCGC 22942 29 100.0 32 ............................. GACCTGATCGGCCGTGGCGTGCTGCCCCCCAC 22881 29 100.0 32 ............................. GTCTGACCGACGCTCGCGCCCAGGACACCGCG 22820 29 100.0 32 ............................. GCCGCCGAGAAGAAGGTCAGGCAGTGGCAGGC 22759 29 100.0 32 ............................. GTTCGGAGGGAATGTCTTGCATACTGTTCGGC 22698 29 100.0 32 ............................. AAGTCCCGGATCGGATACAGGATGTTCGACTT 22637 29 100.0 32 ............................. CCGACCGTGCAGGCGGTCCCGGCCTCGGTGAC 22576 29 100.0 33 ............................. GCCGCGACGGCCAGCAGCTGAGCCTGCAACCGG 22514 29 100.0 32 ............................. GAGACTTCTGACGCGCTGGCCGGCTTCTACCC 22453 29 100.0 32 ............................. GTGAGGCAGGGGCATGGGTCCCTGCCTCCGTC 22392 29 96.6 33 ............................A GCTGGCACCCTGGCAGATTGTCTGGGTGATTGC 22330 29 100.0 32 ............................. GGATCAAGGGTGAGCGCTCAGGGATTTGGTTC 22269 29 100.0 32 ............................. ACCGTGCGGGCCGTGAAGTTGTGTAGGTCTTC 22208 29 100.0 32 ............................. ACTGACTCTCAACCTGGCCCCGCTCGTGCGCG 22147 29 96.6 32 ............................A TATTCGGGATAGCGCGAGGTGTCCGAGGGATC 22086 29 100.0 32 ............................. CGATCATGGTGGCTGTTTCGAGGGGGGCCGAG 22025 29 100.0 32 ............................. TCAACGTAGGTGGTCATCCCTACTCCCCCCTC 21964 29 100.0 32 ............................. GTTGCCGAAACTGCGCACGGCCTGAATGTGAG 21903 29 100.0 32 ............................. CAGCTCCACCGCGACCCGTTCGGGGGTCTGTT 21842 29 100.0 32 ............................. ACGTCGGTGTCGTTGAAATACTGGGTGACCCT 21781 29 100.0 32 ............................. ACATGCCGTTCGTGGTATCCGACCCGGACTAC 21720 29 100.0 32 ............................. TCGCGGGCGATGAGCTTGAGAGCTCGCGAGAT 21659 29 100.0 32 ............................. GAAACCTCAAAAGGAGCAAGATCCGTACGCGC 21598 29 100.0 32 ............................. GTCCCGACGCCGCCGGCGACCCCTACGGCGAT 21537 29 100.0 32 ............................. CTGGAGGACGGCCACCAGGGGGACGGGGTCCC 21476 29 96.6 33 ............................A GCGTGCCTTCGACGGCGACGCGGGCCCCAACAC 21414 29 100.0 32 ............................. TTGGATGCCCTGCTGCCGGGCGGCACGAAGGT 21353 29 100.0 32 ............................. GTCGGATACCTCGACCGGGCCGCCGAGCTCAA 21292 29 100.0 32 ............................. TCACACGAGACCATCACGTGCCCCTCGTCGGC 21231 29 100.0 32 ............................. TGGCGCAGTGCCTACACACAGACGTTTCTTGA 21170 29 100.0 32 ............................. GCGGCGCGCAAGGAGTACCCGGCGACGCTGAA 21109 29 100.0 32 ............................. ACCGCGCGCGGCGCGGACGAGATCTGGGAGGC 21048 29 100.0 32 ............................. ACGTTCCGGGCCAAGTCGGACGAGATCCGCGC 20987 29 100.0 32 ............................. CCCCTCAGCCGCCCCGCCCGTCTCGGGCTGAG 20926 29 100.0 32 ............................. ATGGCCAGGCCGCAGGGAAAGTCGCCGCGGAT 20865 29 100.0 32 ............................. GCGATCGGCGGATGAGCGCCGCACCCGCCCCG 20804 29 89.7 32 .......................AC.T.. CAGGCCCGACCGGCAGGGCTGCGCACCATGCG 20743 29 69.0 0 .T.C.......A....T..A..C.CC..A | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.1 32 CCGGTCCCCGCGCGAGCGGGGGTGATCCG # Left flank : GTGATCTTCCCGATGTCGTGCAGTCCCGCCCAGAAGCACAGCAGTCGGCGGCATGCTGCCGACTCCCAGCCCAGACGCCCCGACAGACGCTGACGCACCTGCGGCGTCAGCACCACATCCCACAAAGCCCCGGCCACCGCCGCCGTGTCCAGCAGGTGGCAGATCAACGGGTAGGCCGACGGGAGCCTCCGCTCCTTGCCCCACAGGCGTACGTCAACGTCGGCGTCCGGGGCCGGCACAGGGTGCCCGGCGTGCGGCGGTGAAACCTCGTCTTCGGTTGCCATGGCACAGGGCTATCACCCGGGTCTGACAACGAGGCTCGCAAGCACCTCTGGCTGGGCAAACAGTCCATTCGCCAGCTGCGCTGACAGGCACTTGCCAAAATGCCTGGTATGACTCTCGATCGTGCGCCAACGCCTGGGAAGATACCTGTCGTGAACGGGACGCCGACCGATGGTCAAGAAGCGGCAAAGCCAATGCATTGACGCAGGTCAGAAAGT # Right flank : GGGACCGACGCACGATTTGCGCCAATTCCCCCCCTCTTCCTCATGCGGATAGGGCTGCCTCGGCCGCCCTGCCAACTGACACGCCCGGCACGTACCTGTTCCTCACGCAAACGAGGCGTCACGACCTGAACCGGCACACGCCAGAGCGCATAGCTGCCCAACACGCGTCCGGCGATGCACGGGACCGGGACCGGACCGGCCCAGCGGAGCGCTCAGGCCGGTCCCAAGCCCGCGGACTTCAAGTCACGCTCGAAGCCCTCCAAAGACAATTCAGACGTCCGTACGCAGCAGCACGATGAACCGCAGGTCCATGTTCCTCAGCGGAGCCATCGCCATGATCTTCACGCTGACCTCCTCGTCGTGATGGGCGGGAAGGCGCAGACGCCGGACGTGTCCGTCGGGGTGGATGATCGTCTCGGGTTCGGCCCAGAGTTCGCGCGCCACGGGGTTGCCGCGGAGGATGTCCTCCTTCAGCCGGCGCAGAGCCTCGTTGTCCGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCCCCGCGCGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16139-14674 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRX01000076.1 Streptomyces sp. WAC00469 AA000134-72_WAC00469, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================== ================== 16138 28 100.0 33 ............................ TAGCGGGCGCTGCTGACGCGCTGGCGGGCGGCG 16077 28 100.0 33 ............................ TGACTAAGGCCGGGAGGGTGAGAGATGGCATCG 16016 28 96.4 33 ...........................C GGCCTGGTCCTCGTCCCGGCCGGCGCGGCCGGG 15955 28 100.0 33 ............................ ACGACCTGCGACTCGCTCGCGCTGGAGAGCGCG 15894 28 96.4 33 ...........................A GGGTTTCCTGGAGCACGTGGACCTGCTGCTGGG 15833 28 100.0 33 ............................ CCGTGATAGCCATGCCCGGCCGCCTGACGGCCG 15772 28 100.0 33 ............................ AAGCCCCGCCGGGGATCCGGCGGGGCTTTGACG 15711 28 100.0 33 ............................ GGTCCAGGCCGTGGACACCCCCGCCTGACGCAG 15650 28 100.0 33 ............................ GCCGGCATCAGGGTCCTGAACTGGCACGTGACG 15589 28 100.0 33 ............................ CGCGAGAACATGGCGCCGGCCGCGTGGGCAGCG 15528 28 100.0 33 ............................ CAGCCGGGCCGGGGTGGCTGGGGCGGGGCCGAG 15467 28 100.0 33 ............................ GAGCTGCAGACCGAGCGTGACGCCCGCGATCTG 15406 28 100.0 33 ............................ AAGAGGGAGGGAAAAGGGGGGCAGATTTCGCAG 15345 28 100.0 33 ............................ CGTCCCGCCGACCCCGCGGAGATCGCGCGCGAG 15284 28 100.0 33 ............................ TCCTCTCATCGCGTCGTGGATCTAGGGCCGGAG 15223 28 100.0 33 ............................ CGCGTGATAGCCATGCCCGGCCGCCTGACGGCG 15162 28 100.0 33 ............................ GAAGGCCGACAACCTCAACTTCCGGCACATTCG 15101 28 100.0 67 ............................ GCACATTAGGCAAGTACACCGAGAGCCAAGTGGTTCTCCCCGCCAGGCGCAGTCCCGGATGATTCGG 15006 28 100.0 33 ............................ AGGGCCACGACCCAGGCGGTGACCTCATGACGG 14945 28 100.0 33 ............................ TCGCGGTACCGGACAGCCGCTTCCACTGAGTCG 14884 28 96.4 33 .......T.................... TAATGGGTGACCCGCACCTCGCGCCCGTCGGCG 14823 28 100.0 33 ............................ GCGGTCGGCACGCTCTTGGTGCTCGGGCGCTGG 14762 28 100.0 33 ............................ GCGCGGCGTGGGCCGAGGTGCCGGCAGTCGCCG 14701 28 67.9 0 ........TT........C.A..ACTGC | ========== ====== ====== ====== ============================ =================================================================== ================== 24 28 98.2 35 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGGCCAGCTCAGCACTCAGGTACCGGCCTGCATGCACGGAGCAGAACTGAAAACCAGACAACTTCCCTATATCGTGCAGCCCCGCACACAACCCCACAACACTTCTCGCCCGCTCAACCTCACCGACAAGCCCAAGCCCCTCGGCAATCTTCACCCGCTGATTCTCGGACAGATACGCATCCCACAGATGCAGCGCCATCGCAGCCGCATCCAGACAATGCCGAATCAACAGATACGGCGGCAGCGCCGGATCCAGCCCCCTCGACTTACCCCACACCGACTCATCCGGCGCTCCCGGTCGCCTCGCCATCATCGTCCTCACCCCCGGGGCAGATGCCGTCCCAGTACCGAAGGCGGCATTCAAGCACTTCCCAGTGACAGCGCCACCGCCATCCAGCCCCCGGTAGAGTGACGACGTGCAGCCTCAGCCATCCCTAGATGACATGCTCACCAGAGCAAAGAAAAGGCAAAGCCCCTCTTGAGTGCCTGGTCAGGAAGGG # Right flank : TCCTGCCGTGGCCATTCGCCCCTTCGTGCCAGCAGGCGCACCAAGCGGGGCACGAGCTCGCCGTCCGCGCATGTGTTCTGGTCCGCCGAGACCAACCCACTCTGTTGATAGCGCCGCTCCGATCGCCGACCAGTAGGTTTGGTCAGCGGCGGGCCCGCGCGCCCCGTGATCACGCCGTCGTACGCAGCGCAGCAGGCGGCTGGGGGATCACGGCCTGAGCCATGGCCTGCCGCACAGCGCGAAGGCCACCCGGAGGACCCGGGTGGCCTTCGCTAAGCCTGAACCCTGGGGGTATGGCCTGCCCTCTTCAGAGGGCTACCAGGGACGATGCCAGGGTCTTCGCTGATCAGCGTACCTACGCTCCGACTGCCGCGACCCGTCCGGCGCCCACCTCGAGGTCGGCGTCGACGTCGCGCTGGCCAGGTGCGAGGAAGGCGGCGTCGGCCGGTACCCGGGCGGGCGGCACCGATCCGCGGTTCGAGAATGGGCCCTTGGCGGTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26050-26925 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRX01000076.1 Streptomyces sp. WAC00469 AA000134-72_WAC00469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================ ================== 26050 33 93.9 28 ............................C..G. GACCGCTGCTCGACCAGGCATGGCACAA 26111 33 93.9 28 .............................C..C AGCCGACCGCCGTCACAGCGGTGCTGTG 26172 33 100.0 28 ................................. GGGAGCTGGTCAAGGCCGAGGACGGCAC 26233 33 93.9 28 .............................C.G. TCGAGGGGCCCTGCGGACCGCCGCCGCC 26294 33 100.0 28 ................................. CAGGGATCGACACCCCGGTGCCGGGCCT 26355 33 93.9 28 ..............................T.A TCTGACCCCCGCGCCCAGGACATCGCGC 26416 33 90.9 28 .............................T.GC GGTACCGGACAGCCGCTTCCACTGAGTC 26477 33 93.9 27 .............................CT.. TGCTGGTGTCCGGTTGAAGCCTGGCCG A [26508] 26538 33 97.0 25 .............................A... TCCGCACGCTGCAGGAAGCGGTACA ACA [26566] 26599 33 93.9 28 ...............................GA GGCCGTGCTGGAGCGGGAGATCAGTCAC 26660 33 90.9 28 ..............................AGA CGCAGTCCATGGAGCCCGAGCACATCGA 26721 33 87.9 28 .............................ATGT ACACCCGGCCCGGCACCGCGTCGCGCAG 26782 33 87.9 76 ...T...T.A...................A... GGCCCAACGCGGGCCGCGCCGTCATGTCTTCCCACCGACGGCCGCTGAACGAAACCGATGGTGCTTGCCGTACCTT C [26811] 26892 33 81.8 0 ......T...A....TC.......A....C... | C [26894] ========== ====== ====== ====== ================================= ============================================================================ ================== 14 33 92.8 31 GTCCTCCCCGCCGACGTGGGGGTGTTCCGGCCG # Left flank : CGACGTCCAATCACTTCTTACCCCACGCCACAACGCCGCCGTCGGCACCGACGACGATAAAGACGAAGAACGCTCCGAACGGCAGGACGTACGCATGGTCCACCTCTGGGACCCGCACGCCGGGGTCCTCCCGGCAGGCGTCAACTACGCCGCAGGAGGCAACTGATGCCGTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGCCCACCTGCGCGGCGCCCTCAGCCGGTGGACCAGTGAAGTAGTACCTGGCATCTTCGTCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCTCCTTGTGACGGAGGTCGTGGGTAACGGCGCTGCCGTCCTTGTCCACCCGGCTGCCACGGAACAGGGATACGCCATCCGCACCGTTGGAACTCGCCGCAGGGTCCCCATCGACTTCGATGGTCTTACCCTAATTCGCATGACCCCCAACCCGAAGGCAAAGGAACTGCAAAGCCCTCCATAAGATGCAGGTCAGAAAGG # Right flank : GCGTACAAGCCGGCGGCTGCCCGCCTCGCGTCTTCCCCGCCACGGTGATGACCGAGTGGTGGGGGGATGCCGGGACCTGATCGTCCTCGGCGAGAGCAATGACGGCATGGTTCAGGTGTGGTCGGGCAAGCCCACCGCCGCCGTCCGCGATCCGGCCCGGCACTCGCGTCGAAGCCCCAACGGGCCTTGGAGCCGTTCGCCGCCAGCCCTGCCCCGATGGCCCACATCGTGTGCGCCTCGCCGTGCACCCCGTCCTCGACAGGGCGTCACTGACACCCGCGGCACTGCGGTCGGTGAACGAACAACTGCGGTTGCACAAGCTGCTGGGCCGCTCCATCTCCGGCCTGCCCACATCACTGAACGGCGTGACCGGGGCTCCGTACGGGCCGGTGTGGCCGCTGGACCCCCCTGTGGCCGCACTACCTTTGGCGCGTCCGCGACTGGCTGACCCTCCAGCAGCACGCCACCACCAGGCAGTGGGCCGGACACCTCGCCGCCGC # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGTGGGGGTGTTCCGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2405-2982 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPRX01000157.1 Streptomyces sp. WAC00469 AA000134-153_WAC00469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2405 29 100.0 32 ............................. CGGATGACGGCCCGGAGAAGCGCGGTTTTCTG 2466 29 100.0 32 ............................. TACGAGGTGCACTGAGGTTCTACACGTTCTGG 2527 29 100.0 32 ............................. ATCGTTGCCTCCAACCAGGAACTCGAGGATGC 2588 29 100.0 32 ............................. GACGTCGCGCTGGTCACCGGCCTGAACAAGGG 2649 29 100.0 32 ............................. ATCGCGGGCCCCGTTGGTAGGACGACCGGTTC 2710 29 100.0 32 ............................. GCGGCGAGGTCGCGGATCACCCAGTCCGGCAG 2771 29 100.0 32 ............................. GTCCCCATCGGAACCGGTATCGCCGCGGTGCT 2832 29 100.0 32 ............................. TCGCTGGGGTCGGCGTCGACGAGGAGCAGCCA 2893 29 100.0 32 ............................. GCCGGCCGCGCCGGACGGCTGTCGCTGTGGGT 2954 29 72.4 0 ..A.........A.........G.GGGAC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GTGCTCCCCGCGCGAGCGGGGGTGATCCG # Left flank : CGAACCCGTCACCACCCCCGACCCGGACGAAGAACTCGTCGACCTGTGGGACCCCGTCTCCGGCCCCATCGCCGGCGGCACCAACTACGGCACGGACGCCCCGTGAAGCCGACACCGGGACTCAAGACGCCCCACCCAGGACCGCCATGGCCTCCATGATCACCATCTCCGTCACCGCTGTCCCCGACCACGTCCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCACACCTGTACGTCGGCACCGTCTCCGCCCGCGTCCGCGACGAACTGTGGCAGGCCGTCTCCGGCTGCATCACCGACGGAGTCGGCGTCCTCGTCTACCCCGCGGACAACGAACAGGGCTTCGAACTACGCACCACAGGACCCCAACGCCGCCACCCCGTGGACTTCGACGGCCTCACCCTCATCTCTTTCCACCAAGGCCACAACGCTACGACCCGTCAACCAACCCAAGAAATGGCAAACTGACTACAAAAGCCCAGCTCAGGAAGT # Right flank : CTCGACGATGCCGCACACGACGGGGTCGGTGAACTGACGCTCCCCGCGCGAGCGCCACCCTAATTGCTTCTGCAACGTGTCGGGTGGGTGTGCCCACTCGTGGGCACACCCACCCGACGGAGCAGGATCGAGGAAGGTTCAGCCGGGTCCAGCAGGGGTCAAAGGTCCGTTTTTTCGCTGAAATCACAGGTGAGAAGCGTCTCATTTCCGGGTTTGACTCCCCTAGGCTCCACCGCAGGTCAGACGCCCTTCGGATCGGTGATCCGGAGGGCGTCTCGCGCTGTCGGAGGCCGTTGCACCGCACTGAGCGGCCGTTGGCTCCCGGGCCGGCCGGACGCGCTCGGTGCCCCTCGCTTCCGCCTGACGATGCCCCGCCCGGACGCCCGCACCAGGGGCGCGGTCCGTCCGGCGGGCCGGGACAGGGTGCACCGGCGCGTGGGCCGGGGCCGGAGCGCCGGTCCCCTCCAGTGAAGTACGTACCGACACGGGGAAGTTGGGCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //