Array 1 71045-72171 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUEK01000011.1 Escherichia coli strain EcFF283 NODE_11_length_192480_cov_38.0105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71045 29 100.0 32 ............................. AAATAGACGACCAGATAGCCGACCAGATTGGA 71106 29 100.0 32 ............................. TCTGTTAATCAGATTAAAGGTGCGGTAATTGA 71167 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 71228 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 71289 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 71350 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 71411 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 71472 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 71533 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 71594 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 71655 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 71716 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 71777 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 71838 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 71899 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 71960 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 72021 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 72082 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 72143 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97871-98572 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUEK01000011.1 Escherichia coli strain EcFF283 NODE_11_length_192480_cov_38.0105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 97871 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 97932 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 97993 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 98054 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 98115 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 98176 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 98237 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 98298 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 98359 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 98422 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 98483 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 98544 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //