Array 1 12151-17972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTY010000010.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 1374 CIRM_BIA1374-i1-1_scf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12151 28 100.0 33 ............................ TAGGAGGCAAAAAAATGGAAGTAACAGAAATTT 12212 28 100.0 33 ............................ TTTAAATATTTTTCATAAGCATATACATACTTA 12273 28 100.0 33 ............................ TAGCGGGCAGTTGACTCAGTTACCAGTCGGAAG 12334 28 100.0 33 ............................ TAAAAAAACGCTAAAAAATATTTTGAAAAGACC 12395 28 100.0 33 ............................ CTTTTTTGTCCCCCCGTCAAGCTCTCAGAAAAA 12456 28 100.0 33 ............................ TGTGTTACTATTAAAAGCGTCAAAGGCAAGACA 12517 28 100.0 33 ............................ TAGCACCCCCTCAAACCAACGCCCCGCAAATTC 12578 28 100.0 33 ............................ AGTCCGTGGCTACTCACTATATGGCGTCGGATG 12639 28 100.0 33 ............................ CTGCTGAGCTCTATGATGACTACCAGGGAGACT 12700 28 100.0 33 ............................ CTCATCCTGACCATACCGATCTACCTCCTCTAA 12761 28 100.0 33 ............................ TGTCTTCAACGTCGGTGGTATCCATAATAGCCT 12822 28 100.0 33 ............................ TTGTCGACCGCTAGCCATAAGTATTGTCATTGA 12883 28 100.0 33 ............................ TCAGTAGTATAATAAAAGCATGAGGTTGAGAGA 12944 28 100.0 33 ............................ TTTCGGTCGCCGCCAAGAGTGTGAAGTAGGCAC 13005 28 100.0 33 ............................ CGTAGTATAATAATAGTTGTAAGGAGGAAACAA 13066 28 100.0 33 ............................ TAGGCGTCAAATTCTACCTGTTTTTTTTGCCTG 13127 28 100.0 33 ............................ TATCGACTTATGGGCGCCTGAAGATGAAGAGGT 13188 28 100.0 33 ............................ TTATAAAGTTAAGAAACAGAAATGAGGTATATA 13249 28 100.0 33 ............................ TAGTTACAATATTCCTCAAACATCGATGTTACA 13310 28 100.0 33 ............................ TTTTTTGGGTAGGATACACATACGTAACATGTG 13371 28 100.0 33 ............................ CGAGAGAAATTGGGAACTTTATTTGGGACGGGT 13432 28 100.0 33 ............................ CGGGTTCAGCGACCCGGCCGGCGTAGGCGTTGA 13493 28 100.0 33 ............................ TATAATCAAAGTTAAGAAAGAAAGAGGTACTAA 13554 28 100.0 33 ............................ GCTTATGTAAAAAATTCTACAGGCTCAAAAACG 13615 28 100.0 33 ............................ TCAGATGCTTGGAATTAATCTTCAAGAAGTTCT 13676 28 100.0 33 ............................ TGAGTCAAATTTTGAAGACTATGCAATCGATTC 13737 28 100.0 33 ............................ TTTTGGTTGCCCGTCATTACAACGGCGTATTCA 13798 28 100.0 33 ............................ TATGGGCAAACTGCGTTTACCTACTACGCGGAA 13859 28 100.0 33 ............................ ATCCAAACAACGGCTCAAAATGTTACGGGAAGA 13920 28 100.0 33 ............................ CGGTCTCCTTGGCAACGCTGATAGTGCTACGTG 13981 28 100.0 33 ............................ TATCAGCAATGCTCTTTTGAGTAGCAGCCATTT 14042 28 100.0 33 ............................ CCTAGTGATGTAATAGAAGCCGCCGGCATTTCT 14103 28 100.0 33 ............................ TACTGTAGTGAGCTGTTGGATGGCTTAGATGAA 14164 28 100.0 33 ............................ CGCAACGCCCTGCAGAAGCTCTGGGACGCCATC 14225 28 100.0 32 ............................ TTAAGGTTTTTTCATATACATAAACATATTTT 14285 28 100.0 33 ............................ CAAGTGGCATGTTGTCGTCGCTATGTTTGAGGA 14346 28 100.0 33 ............................ TAAATGGTCCGTTATAGTAGCCATGTTCGAGGA 14407 28 100.0 33 ............................ TTGTTAAGGGAGCAGCTGAAAACAGATCTCTTA 14468 28 100.0 33 ............................ TATCGGTCTTAACTGAAAGACGGGACGATACCG 14529 28 100.0 33 ............................ TCTTTATAGTCAAGATCATCAAGATCATCAGCG 14590 28 100.0 33 ............................ TTGTCTTGTATGTCTTGCTGTAGTTTGCTTTGT 14651 28 100.0 33 ............................ TAAAAAATATTGAAAAACACTTGACTAAATTAA 14712 28 100.0 33 ............................ TAACAATGGTCAAACTGTTGAAAATAACAGATT 14773 28 100.0 33 ............................ CTTTAGACTTCACTATCAAAGCTAGCACCTAAA 14834 28 100.0 33 ............................ TGATCCACTTGTTGCGTCGCCGACGTCAGACAA 14895 28 100.0 33 ............................ CGATAAGGGTGATAAGGGCGCAGGAGCTCACAA 14956 28 100.0 33 ............................ TTCCTAGGTATTCGGCCGCTTGCGCAGCCTTTA 15017 28 100.0 33 ............................ CCTACGATCGGGCTTTAGCTGCGGTTGAGGGTA 15078 28 100.0 33 ............................ TCCAGTCTACTAAGACACCTAACCAGGCGATTG 15139 28 100.0 33 ............................ ATTGGTTTAATTTTATCGTTGCAATCGGCACTG 15200 28 100.0 33 ............................ TTTTTCGGGCCGGCCGATCAAGTAGCCAATAAA 15261 28 100.0 33 ............................ TGACATATCTATTATTAAGAATATCTCCATAGG 15322 28 100.0 33 ............................ CAAGCAAGACAAGCACTTCACAGCAAAACAAAA 15383 28 100.0 33 ............................ AGGAGCATACGATAGACGGGACTAAGCAGAAGG 15444 28 100.0 33 ............................ CCTTGTTCAAGCCCTTCAAGCCAGTTAGGTCTA 15505 28 100.0 33 ............................ TGGACATAAACGCCAGCCACTACAGCAAGGGCA 15566 28 100.0 33 ............................ TGTACCGGATGGCATTCCGGACATGCTAGGGGA 15627 28 100.0 33 ............................ GCATCAGCGTGATAATCGCTTGCCCGTTTGACG 15688 28 100.0 33 ............................ TATTCTGTTGATTTAGGAACTTTAACAACATCA 15749 28 100.0 33 ............................ TTAGAGCGTTGATTTGCTCAGTCAAAACGGTGA 15810 28 100.0 33 ............................ AAAAAACATCAAACAGAAACACAAAAAAACCCG 15871 28 100.0 33 ............................ CGTTCGTGTGGCCTTGACTTCTTCTGGAAGATC 15932 28 100.0 33 ............................ TTGGAATCGCCAACCTTGACCACCACCTGGTCG 15993 28 100.0 33 ............................ CAAAAAATGGTAAAAATTTACAAAACAAAAACG 16054 28 100.0 33 ............................ CTCGAAAAAATGGATCTCAAAAACCCCGAAAAA 16115 28 100.0 33 ............................ TCGGTGAAAGCATCCCAAATGAATTCCTGCATG 16176 28 100.0 33 ............................ TTAATTGCTGAGTATGCAAATAAGATTGAAAAG 16237 28 100.0 33 ............................ TAGACTTATAAAGTTAAGAAAAGGAGATTTTAA 16298 28 100.0 33 ............................ CGCTACCGACACGCAAGACTATGAAAAAATGTA 16359 28 100.0 33 ............................ CCAAGGATCACCAAAAACGCTAAAAAACCAAAA 16420 28 100.0 33 ............................ TAAAAAAATATTGAAAAACAGTTGACAAACCAA 16481 28 100.0 33 ............................ TATGACCGTACGTGAATTTAATGCTAATTGGGT 16542 28 100.0 33 ............................ TTTTTACTACCAATTTCAAAAACTGGTCGATCG 16603 28 100.0 33 ............................ CTCATTGCCAGAATATTTAAGCAGATCGTTATA 16664 28 100.0 33 ............................ TAAGCCCTTAACTTTTTGGGCTCTTGATATTGA 16725 28 100.0 33 ............................ TATGTTACGTCAAAATCTTCACTGTTTGCAAAT 16786 28 100.0 33 ............................ TAGAATTATAAAGATAAAAAAAGAGAACAAAAA 16847 28 100.0 33 ............................ TGGGTGATCCTTTTACGTTTCTTTTTTGCCTTT 16908 28 100.0 33 ............................ CGCTGGTCATAAGGCAAACGTGGTCTGCATTCG 16969 28 100.0 33 ............................ TGAAGGGCTGACCAAGCAAATTACTGGTGGTGA 17030 28 100.0 33 ............................ TGTTAAGAATGGCTATGTTGATCTGACTGATGG 17091 28 100.0 33 ............................ CACGAAAAAAACTATCGATAGATGTACCGCTTA 17152 28 100.0 33 ............................ TATCCAGCTCCTAGTTCACCAGCTATTGCATTG 17213 28 100.0 33 ............................ TTTCCGCTATTTCCTTTATGGTTGCATGTAGCT 17274 28 100.0 33 ............................ TCGTGGATGGCGTTAATTGCTTTTGCTGAGACG 17335 28 100.0 33 ............................ TCATTCGTTTCTTCTGGCAGTTCGCGGCTTGCG 17396 28 100.0 33 ............................ CATTTAGCCCCGTGTCTAAAGGCTTATCAGCAA 17457 28 100.0 33 ............................ GTATTGGCGATGAATGACTTGCCAGCCAAGTCG 17518 28 100.0 33 ............................ TTTCCTCATTACTTCCCTATGCTTAGCGTTCCA 17579 28 100.0 33 ............................ CACCTTTTCTTTGAGCTAACCACTGCTGGACCT 17640 28 100.0 33 ............................ TCAAAGGAAACCAACATCCCGCCCAGCACACTA 17701 28 100.0 33 ............................ TACACACGTTTTTTGCAGCAGGTGAAATGGTGT 17762 28 100.0 33 ............................ TTTTGCTCAAATAGTTGCGCTGATCGAAAAAAG 17823 28 92.9 33 ..........................TA GAACTCAAATCACCTTCGTCATATTGACCAGAG 17884 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 17945 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ================================= ================== 96 28 99.8 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //