Array 1 94446-93622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACOK010000002.1 Escherichia coli strain 1232a 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 94445 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 94384 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 94323 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 94262 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 94201 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 94140 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 94079 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 94018 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 93957 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 93896 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 93833 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 93772 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 93711 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93650 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121577-120145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACOK010000002.1 Escherichia coli strain 1232a 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121576 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 121515 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 121454 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 121393 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 121332 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 121271 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 121210 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 121149 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 121088 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 121027 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 120966 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 120905 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 120844 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 120783 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 120722 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 120661 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 120600 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 120539 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 120478 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 120417 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 120356 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120295 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 120234 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 120173 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //