Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUU01000001.1 Listeria monocytogenes strain FRR B 2971 FRRB2971_NODE_1_length_622324_cov_67.5543_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 509857-513329 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUU01000002.1 Listeria monocytogenes strain FRR B 2971 FRRB2971_NODE_2_length_518707_cov_91.2503_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 509857 36 100.0 30 .................................... TTATGCAGATTTAAGACGTGCAGATTTAAG 509923 36 100.0 30 .................................... TAGTGACCTGGCAACACTACCTGTTCCTGC 509989 36 100.0 30 .................................... TGCACTTTGGACATTCTATATATTCTTTTT 510055 36 100.0 30 .................................... ATTCAACATCGTTTAACCGCGGTTGTTGTT 510121 36 100.0 30 .................................... CCCTCGTCCACTCTAGTAGCATCTAGGTCT 510187 36 100.0 30 .................................... ACCAGTGAGACTAGTTGCTTCAGGTTCCTT 510253 36 100.0 30 .................................... AAAGTTAGAATTATTTGTACAACTTGAACT 510319 36 100.0 30 .................................... TTTCTACATCGGAATACTCGCTTCCTATTT 510385 36 100.0 30 .................................... TTGCACTCTGTATCCGTTACAGTCTGAACT 510451 36 100.0 30 .................................... TAACAACAACTAACACCGGCGTTATTGTTC 510517 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 510583 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 510649 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 510715 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510781 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510847 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510913 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510979 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 511045 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 511111 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 511177 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 511243 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 511309 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 511375 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511441 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511507 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511574 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511640 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511706 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511772 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511838 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511904 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511970 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 512036 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 512102 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 512168 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 512234 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 512300 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 512366 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512432 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512498 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512564 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512630 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512696 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512762 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512828 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512894 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512960 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 513026 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 513093 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 513159 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 513225 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 513291 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [513316,513322,513325] ========== ====== ====== ====== ==================================== =============================== ================== 53 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //