Array 1 1166668-1165093 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHX01000001.1 Listeria monocytogenes strain FSL L7-0669 NODE_1_length_1474374_cov_16.548425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1166667 29 100.0 36 ............................. GTTAAAAACAAACGTGTCACACACAACTTCTTGTTT 1166602 29 100.0 35 ............................. ATCGACATCGCCATCGCCATCCACTTTAAAGACTC 1166538 29 100.0 36 ............................. GCGATTAAAATAGATTTTCCGTTTTTCCTAGCCATC 1166473 29 100.0 36 ............................. TGTTCTACTTTTATAAAATTTTGTTCGTTCGCTCTC 1166408 29 100.0 35 ............................. ACCAGAGTCAATATTATTTACTAACCAGTCGTCAT 1166344 29 100.0 35 ............................. ACTTATAAGTGGTCAAATAAAGAAAAAACTATATT 1166280 29 100.0 34 ............................. ACACTTGGGAACGGTAGCATAGGCTCAAGTCAAG 1166217 29 100.0 35 ............................. AAAATCCTTGAAATTTAAATCGCTGTTGTTGTTGT 1166153 29 100.0 36 ............................. CCAGAAGGTGGACAACATGGTGATGAATGGTACAAC 1166088 29 100.0 35 ............................. AGCCTTATTGACGGTTATAGAACGTTTGTTGAAAT 1166024 29 100.0 36 ............................. GTCAAATACGGATGGTGTACTAATAAAAATCAAAGA 1165959 29 100.0 35 ............................. ATTGACAAGAATTTGGGATATGCGTGGATTGTACC 1165895 29 100.0 35 ............................. AAAAAATCGGAGGCAAAGGTATCATTCAAATCACA 1165831 29 100.0 35 ............................. GACCTTTTGATTCATGGTTCGCCTTGTCAAGATTT 1165767 29 100.0 34 ............................. TTTATATGCTTAATTCCTATCTCATCTAATTCCT 1165704 29 100.0 36 ............................. TATGTCGCGACCTCATTCCGTTCTCGTCTGGATTCT 1165639 29 100.0 34 ............................. AATGATGACGGGGCTTATTGACGCAATTATTCAA 1165576 29 100.0 35 ............................. TGTGTTAAACACCTCGCCCTTTCGATAAGCTTTGT 1165512 29 100.0 36 ............................. TCGCCTAGACATGTCGCAACATTTCGCAACCCCTCC 1165447 29 100.0 34 ............................. TTTGGACACTTGAGAAGGAGAACACGAAAGCTTC 1165384 29 100.0 37 ............................. CGCGATATTTGCGGACAACCCCCGCACCAAAAACGAT 1165318 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGT 1165255 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 1165189 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 1165122 29 93.1 0 .......................C....C | A [1165097] ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.7 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTATGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCTCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1182762-1182282 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHX01000001.1 Listeria monocytogenes strain FSL L7-0669 NODE_1_length_1474374_cov_16.548425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1182761 29 100.0 35 ............................. TTTGAACCATCTATTTTTAAATTTGAAGTGACAGG 1182697 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 1182631 29 100.0 35 ............................. TCAGGAATCCCTGAGTGAGTTGAACAAAATAGAAA 1182567 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 1182503 29 100.0 35 ............................. TTGATTTTATTAATGTTCTTATCAATAGAGTCATT 1182439 29 96.6 36 ............A................ TCGACATAACACATATATTTAAAATCATTAAAACTA 1182374 29 100.0 35 ............................. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 1182310 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.6 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //