Array 1 149124-151533 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYR01000003.1 Pectobacterium versatile strain F16 PB16LOC_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 149124 29 100.0 32 ............................. AGTACATGGAATCCAAAAGACGGGTTTCCTTA 149185 29 100.0 32 ............................. TACTGATCCGATCCGCGCTGGGAACCATGCCC 149246 29 100.0 32 ............................. ACCTGACTTAACCATATCTGCATACTTATTGC 149307 29 100.0 32 ............................. AGACGTGATTGAGTTAGCAACAAACCCATCAA 149368 29 100.0 32 ............................. TTCTTTGTCAAAGGGGGCAGTTTATCAGCGGT 149429 29 100.0 32 ............................. AGACGTGATTGAGTTAGCAACAAACCCATCAA 149490 29 100.0 32 ............................. TTCTTTGTCAAAGGGGGCAGTTTATCAGCGGT 149551 29 100.0 33 ............................. TTGCTGCATGTGCGCGAAATGCCGCAGATCGAC 149613 29 100.0 32 ............................. CCTATTTGAGCGGTGGCGAGCCTAATTGGTTT 149674 29 100.0 32 ............................. CGACCTGATTAGCGTTTACCGCCTCTGCATCT 149735 29 100.0 32 ............................. CTGGAACGGGTGTGACGCTGGGGTATAACCCG 149796 29 100.0 32 ............................. ATGACATCTTACTGAAGGGGCGCGGTGCTGGT 149857 29 100.0 32 ............................. GAAAACATCGGCCCTTTCTGGAAGCTCAGCGC 149918 29 100.0 32 ............................. GTATCATCATCGAATCCAAATGCTCTGGATGT 149979 29 100.0 32 ............................. CGGGAGTGTTGCGGAGTAATCTGGCGCTACAA 150040 29 100.0 32 ............................. AGCGGGTGTTGCTATTTCTTGCCGCTAGGGAA 150101 29 100.0 32 ............................. GCTATGTAGCATTAGTGATGCTGCCCCGAGTC 150162 29 100.0 32 ............................. TGTTTATGTAGGATATCTTCATCTTAAGATTA 150223 29 100.0 33 ............................. CGAAACCGGACTCATCTGGCAATTTGAAGATGT 150285 29 100.0 32 ............................. TACAGTATCCGTCCGGCATGCCGTTGCCTGGC 150346 29 100.0 32 ............................. TGAGTCACGGCTTCCTGATTCTCGCTAACCCA 150407 29 100.0 32 ............................. GCGATTCGATATAAGCACCGAAGATGGCATTC 150468 29 100.0 32 ............................. AACTGTTGCAGGTCTCCGCTCAGGAGTTCAGC 150529 29 100.0 32 ............................. TCATGATGCTCGGCTTGGGCAGGATGGAGAGA 150590 29 100.0 32 ............................. GGTATGTTATCCAGTTAATCCACCCGTACAAG 150651 29 100.0 32 ............................. CTGGAAATAGAGTGGGCTAAACGCTGGGGTGA 150712 29 100.0 32 ............................. TATTGAACAAACCCGACAACAGGAGAAGTAAT 150773 29 100.0 32 ............................. GTATCGCAGGGCGTAATCTAGGACATTGAAAG 150834 29 100.0 32 ............................. GCATGATGGATGGCTTGCCTATGATTTGGGAT 150895 29 100.0 32 ............................. TATACCCATCAGGGCGTAAAGTTTTTGTGTAT 150956 29 100.0 32 ............................. TCCAGCAACAGCAATCGTTGGCTGACCTGCGA 151017 29 100.0 32 ............................. GTTTGATCGCATTTACTGACCATGCTTGCTCG 151078 29 100.0 32 ............................. TATCTGGGACGGGAAGAAAAGCAGCGCCGGCA 151139 29 96.6 32 .A........................... CCAGCGCATCGATCGGGATCGAAAACCTGAAC 151200 29 100.0 32 ............................. CACAATGACAATGAAACGGTATGGCGCTGATG 151261 29 100.0 32 ............................. ATATATGTATCCCGCGCGTGAAATCTCCGTAA 151322 29 100.0 32 ............................. AATTGAGTGGGAGTTAGAGGCAAAGGTAGAGC 151383 29 100.0 32 ............................. ATTGTTTTTAGTTTGGTCACAGGAAACAGGCT 151444 29 100.0 32 ............................. CGGAGCTGGTGGCCACTGCGTCGCGCGAATAC 151505 29 93.1 0 ..........T................T. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCTCGGTTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGAGTCAAATTCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAAGCGGGCAGCGGTGCCGTTCCTGCTGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 170868-171139 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYR01000004.1 Pectobacterium versatile strain F16 PB16LOC_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 170868 27 89.3 32 T.........-...C............. GCATTCTGGAGCGCTTTCAGTGGAAGGGCATG TA,G,G [170871,170874,170884] 170931 28 100.0 32 ............................ ACGGACACCTCAAGCGGTGACGAGCGCGAAAC 170991 28 100.0 32 ............................ AGCCGTTAACCCAACGCGCCCCGCGCCGGGCG 171051 28 100.0 33 ............................ AATTGCTATTAGCTGGCGGATTGCTGGCATCAG 171112 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGCGCTAACGATTAACGAGAATGCCGACCCCACGGTGCGGCAGGATTTTGAGAGTTTCTTTAATCGTTTAGTGCCGGAGGATGAACCGTACTACCGCCATACGTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTCGGAAACAGCCTGACGATCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAGCTCCCCGAAATGCGTCGCGCCAGCGACGCATCCCGATAAGCCTCGAACTGTCTGTACGGCAGTGAATCCCTTCCATTCCGCCGATAGTTGACATTTGCATTTCTAAGCTGCCTATGCGGCAGTGAACTTCATCCCGGCGACCCAACCAGTCTGCGACTCTTTCTAAGCTGCCTATGCGGCAGTGAACGTTGTTGTTTTCAAGCGCTAGGACGCGCTCAA # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACACGCACAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //