Array 1 3520764-3518866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016410.1 Salmonella enterica subsp. enterica serovar Infantis strain N55391 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 3520763 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 3520702 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 3520641 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 3520580 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 3520518 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 3520457 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 3520396 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 3520335 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 3520274 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 3520213 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 3520152 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 3520091 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 3520030 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 3519969 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 3519908 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 3519847 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 3519786 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 3519725 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 3519664 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 3519603 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 3519545 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 3519484 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 3519423 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 3519362 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 3519301 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 3519240 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 3519179 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 3519118 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 3519017 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 3518956 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3518895 29 93.1 0 A...........T................ | A [3518868] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3538662-3537046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016410.1 Salmonella enterica subsp. enterica serovar Infantis strain N55391 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3538661 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 3538599 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 3538538 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 3538477 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 3538416 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 3538355 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 3538294 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 3538233 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 3538172 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 3538111 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 3538050 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 3537989 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 3537928 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 3537867 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 3537806 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 3537745 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 3537684 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 3537623 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 3537561 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 3537500 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 3537439 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 3537378 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 3537317 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 3537256 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 3537195 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 3537134 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 3537073 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //