Array 1 10721-11043 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952285.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 10721 29 100.0 43 ............................. ACATTGAAGCGCTGAAGAAGAAGCACAACAAGTCAAAGTCTTA 10793 29 100.0 43 ............................. GCAACAACGTCCTCAACAGCTTCCACACCTACGAAAAGAGTTA 10865 29 96.6 46 ....................A........ ACCTCTTCATGCAGTGCGTCGCCTGGGAAGAACTCGGCGAGTCTTA 10940 29 96.6 46 ......A...................... ACTCTACCGTCCTGGCGTCGCCGTCCGGGACAGTCAAGGCGTCATA 11015 29 86.2 0 .....T......A........A......A | ========== ====== ====== ====== ============================= ============================================== ================== 5 29 95.9 45 ATGCACCTTTTGGCGCTCGGTGCTTTCTG # Left flank : AATGCACATTTTGGCGCTCGGTGCTATCTGACGTGGCGGTGGTCAACACGAAGGGTGGCGTTGCTAAGTCTTAATGCACCTTTTGGCGCTCGGTGCTTTCTGACGCATCCTGGGCAACAAGCTTGGACTTTCGATCGGCGGGTCTAAATGCACCTTTTGGCGCTCGGCGCTTTCTGACTAAGGTCAGCTAAGCCGGTGACAAGGTCGAGAAGGGCGCGTCTTAATGCACCTTTTGGTGTTCGGTGCTTTCTGACGTGACCTGTACGATGACGAAACAGCCACTATCCCATGTCTTAATGTACCTTTTGGCGCTCGGTGCTTTCTGACAGACATCGAGCTCTGACGGCAAAGCGACGAGCACGTCGTATTGTCTTAATGCACCTTTTGGCGCTCGGTGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AACTTATCCCTTGGGCTGTCTCTATCGCAGACACTATTGGCGTCTTAATGCACCTTTTGGCGCTCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATGCACCTTTTGGCGCTCGGTGCTTTCTGGGTCGTCGGAATTTACCGCCTATGAATCGGTTCAATTGTCTTAATTCACCTTTTGGCGCTCGGTTCTTTCTGACTCAGCGACTACAAGCAAGCCACACACTTCAAGCGTGCCGCGTCTTAATGCACCTTTTGGCGCTCGGTGCTTTCTGACGCGCGACTGCGTGTGCTGCGGTGATGAACCCGGTAAGGCGTCTTAATGCACCTTTTGGCGCTCAATGCTTTCTGACGCGACGATCATCGTCGTCCCCGCCCTGATCGGAGCGTCTTAATGCACCTTTTGGCGCTCGGTGCTNNNNNNN # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCACCTTTTGGCGCTCGGTGCTTTCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 11469-11209 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952285.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 11468 35 94.3 41 .........TT........................ GCCTTACCGGGTTCATCACCGCAGCACACGCAGTCGCGCGT 11392 35 100.0 42 ................................... GCGGCACGCTTGAAGTGTGTGGCTTGCTTGTAGTCGCTGAGT 11315 35 94.3 37 .......A..................A........ AATTGAACCGATTCATAGGCGGTAAATTCCGACGACC 11243 35 88.6 0 ...............................NNNN | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 94.3 40 CAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Left flank : CAGAATATCAACGTTCCCATTTCAAATATTGAAGAACTCCCAGCCGAATTGCATGCGACATTTTCCAACAACCCTCCGAGACGGGCTCCCACCGAGCGTCAAAAGGTACATTAAGACAGTAAGCGAGCGCCCCGCCGGGAGTGCGTGTTCCTGGGTCAGAAAGCACCGAGCGCCAAAAGATGCATTAAGACAGTGTGTTCGTGGAGAGTGTCAGTGCGATCAGCATCCCGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACAGACAACGCGAGGTGTGGCGAAGGCTGTCGCCCGCTCGTCAGAAAGCACCGAGCGCCAAAAGGTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCACCGAGCGCCAAAAGGTGCATTAAGACGCTCCGATCAGGGCGGGGACGACGATGATCGTCGCGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAGCGCCAAAAGGTGCATTAAGACGCCAATAGTGTCTGCGATAGAGACAGCCCAAGGGATAAGTTAGAAAGTACCGAGCGTCAAAAGATGCATTATGACGCCTTGACTGTCCCGGACGGCGACGCCAGGACGGTAGAGTCAGAAAGCACCGAGCGCCAAAATGTGCATTAAGACTCGCCGAGTTCTTCCCAGGCGACGCACTGCATGAAGAGGTCAGAAAGCTCCGAGCGCCAAAAGGTGCATTAACTCTTTTCGTAGGTGTGGAAGCTGTTGAGGACGTTGTTGCCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACTTTGACTTGTTGTGCTTCTTCTTCAGCGCTTCAATGTCAGAAAGCACCGAGCGCCAAAAGGTGCATNNNNNNNNNNNN # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 1-454 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952312.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 89.7 32 --..........................C CCGGCTCGCCCGTCGATTGTCTCCCAGTCGGA 60 29 96.6 32 ............................C TGTTAACCGGGGAGAGATCACGCACGTGGAGA 121 29 100.0 32 ............................. ATCGCGCCGAAAAGTGAAGAAGGCCCCCACCA 182 29 100.0 32 ............................. GCTCATAGTGCCCGTGACCGTCTTCCAGGCGA 243 29 86.2 32 ...........C.AC.............T CTGTGCCGGGGCCGGACGCGATGACGGCGAGG 304 29 96.6 32 ............................T CAACGCCGACGCAGACGCGCGAGGGGTCAGGG 365 29 86.2 32 ...........C.AC.............T GTCTGACCGCCGCGTAGGGTAGTCGGCCTTTG 426 29 86.2 0 ...........C.AC.............C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 92.7 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : | # Right flank : CGTGACCCGATCGAGCGTTACGGCGTGAGCCTGGTTTTCCCCGCCTACGCGGGGATGAGCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCCTACGCGGGGATGAGCCCGCCGCCGTGGAGAAGAACGGGCAGACGCTCGAGTTTTCCCCGCCTACGCGGGGATGAGCCCGGCGCAGGAAGGTGACCCCCTCATGCCGACCGTTTTCCCCGCCTACGCGGGGATGAGCCCGCCGGTAAGAACCTCATCCAGGGATTCATCAAGTTTTCCCCGCCTATGCGGGGATGAGCCGGTCGAGGACGGGGCGGGCGACTTCGGTCCCGGGTTTTCCCCGCCTACGCGGGGATGAGCCCTGGTGCGCGACGGTGTACTCGATCGCCTGTCCGTTTTCCCCGCCTACGCGGGGATGAGCCGGTG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : GTTTTCCCCGCCTACGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 618-2108 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952312.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 618 29 93.1 32 N...........................C GCCGCCGTGGAGAAGAACGGGCAGACGCTCGA 679 29 96.6 31 ............................C GGCGCAGGAAGGTGACCCCCTCATGCCGACC 739 29 96.6 32 ............................C GCCGGTAAGAACCTCATCCAGGGATTCATCAA 800 29 96.6 32 ..............T.............. GTCGAGGACGGGGCGGGCGACTTCGGTCCCGG 861 29 96.6 32 ............................C TGGTGCGCGACGGTGTACTCGATCGCCTGTCC 922 29 100.0 32 ............................. GTGGCGAGGTCAACGACCAGGCCGTCGAGGCT 983 29 89.7 32 ............CG..............C CAGCCGGGCACTAGTACCCCACCAATCCCGAA 1044 29 86.2 32 ............CGT.............C AGCCACGCGCGGTTGGGTGGCATGGCCATAAG 1105 29 82.8 32 ..........T.CC..T...........T CGTGCTGAATCTTCGGGCCGGGGTCGATAGTG 1166 29 100.0 32 ............................. AAATAGTAAAATAGCCTCGGGCGTTTAAAAAC 1227 29 100.0 32 ............................. TCCTGGAGGTTCATGATTTGCCGCTCTGCGTC 1288 29 100.0 32 ............................. GTGACAGCGCAGGACGCCGTCGGGGAGGGTGT 1349 29 93.1 32 ............CG............... CCGGTGAATTTCATCATCGACACCGTCTACGC 1410 29 93.1 32 ............CG............... GTCGCATGGTCCTGCCCTCCCGTCGGCCAATA 1471 28 89.7 32 ............CG..-............ AAAGTCACGGCGCGCGCCGCGCGCGAGGTGGC 1531 29 89.7 32 ............CG..............C CGTGTACGCCTGGTACGTGTTCACCGACCGTT 1592 29 96.6 32 ............................T CAGCGCCTAAACGTCGCCGCATGGGACATCAC 1653 29 93.1 32 ............CG............... TCGAAAGAGCCTACGTTCTGGGATGCTTACGC 1714 29 86.2 32 ...........TCG..............C GCGGGCATATCCGGTGATGCTCATGCCAAAGT 1775 29 89.7 32 ............CG..............C TTCCCAGTCCGCGGACTCGTCTACGCGGCGTT 1836 29 89.7 31 ............CG............T.. CCGTTGTGGCGCGTGTATTGTGTGAAGGAGA G [1863] 1897 29 89.7 32 ............CG..............T GTCGGCGGCCTTGATGGCATGGCTGCCACCCG 1958 29 86.2 32 ...........TCG..............C GCGTTGTTGAGCGCGCCGTTACCGCCGAGAGT 2019 29 86.2 32 ............CG...........A..C GACTTGAGATCCCAGTCCGCAACCAGCGGGTA 2080 29 82.8 0 ...........TCG...........A..A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 92.2 32 GTTTTCCCCGCCTACGCGGGGATGAGCCG # Left flank : AGAGTTTTCCCCGCGTGAGCGGGGATGAGCCGATCGCGCCGAAAAGTGAAGAAGGCCCCCACCAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCTCATAGTGCCCGTGACCGTCTTCCAGGCGAGTTTTCCCCGCCTACGCGGGGATGAGCCTCTGTGCCGGGGCCGGACGCGATGACGGCGAGGGTTTTCCCCGCGTGAGCGGGGATGAGCCTCAACGCCGACGCAGACGCGCGAGGGGTCAGGGGTTTTCCCCGCCTACGCGGGGATGAGCCTGTCTGACCGCCGCGTAGGGTAGTCGGCCTTTGGTTTTCCCCGCCTACGCGGGGATGAGCCCGTGACCCGATCGAGCGTTACGGCGTGAGCCTGGTTTTCCCCGCCTACGCGGGGATGAGCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTGGGAATCAAACACCAGTCCCTGTGGTACACGTATTCCCCGCAACCGCGGGGTTCTCCGGTGCGCCGTTGGTGTGCATACCCACCGGAATAAAAGATAACGACCCTTGCGCTCCCCTCCCTCCCCGCTGTGTCCCACACGGCTACCCGCAATCGGATGAAGGAGAAGGCGAAAACATGGACGCGGCAATGGTGGCGCAATTGGGTTCTGGTGAGCCGACGGTGATGCACGGTGAGGCGGACACGGTACAGGCGACGAAGTAGGGCGCGCGGGGGCGGCGAAGACGCGGATCCGCACCCGCATCGCGCACGTGGGCAGCGAGTATCGCCGTGATGTGACCTCGGGTACCTGCGAGCTGTGCATCGCAGAGTGGGCTGCCGCCATCCGCGACATCTCCTTCGAGCTCACGGACATCAACACCGACGCCACGTGGGAGACCGTCACCCCGATCCTCCACGTCGGCCCCTGGAACGACATCTGGGAAGTCTGGGTCAACCCC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCCTACGCGGGGATGAGCCG # Alternate repeat : GTTTTCCCCGCCCGCGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 16709-17470 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16709 29 96.6 33 ............................T GATCGGGTAGTCGCCCTCGGCGTCGCCGACACC 16771 29 100.0 32 ............................. GCCGTGGCCCTGATGGCCGCGCACCTTGTCCA 16832 29 96.6 32 ............................T TCCCGGTATATGCGCCGTTTTTGAGCAGGGCC 16893 29 100.0 32 ............................. ATTGACCGGACGTGCAGGCAGCGTCAGGTAGT 16954 29 100.0 32 ............................. TGTCGCAGTGGAGCTTCAGCGTTCCGCTGAAG 17015 29 96.6 32 ............................G GCCATGTACGCGGGCGACTTCCTGCGTAGCAT 17076 29 100.0 32 ............................. AGCGCGAATTTGCGCGCCGGCTGCGCTCGCAG 17137 29 96.6 32 ............................T GCAGGTGCCCTGAGTTAGATTGAAGTTGTTAG 17198 29 100.0 32 ............................. ACCCTGTCCTGCTCGGCCTCACTCATACGGCT 17259 29 100.0 32 ............................. TTCCTGGGCGGCGTTGTGTCGTCCCCGTTCTG 17320 29 100.0 32 ............................. AGCCTCGGCACGCTCACTGGCATGATTGCCGA 17381 29 100.0 32 ............................. GCGCGGACGCTCCCACGCCTTCCTTCATCGCG 17442 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CCAGTATTCCGAGCCTGATCCTGCGGCGCGTCAGTTGCGTAAGCGTCCATCAATGAGTAACTTCCAGAAGAGGCGCAAAGCTCAAGGCTTTCCAAGATCTGACCGATCCGCTTGATAAAAGCGCAGGTCAGAGAGTGTTTTCCCCGCGTGAGCGGGGATGAGCCCGCATGGGCGGGGCAGCGGCTTGGACGGACGAGGTTTTCCCCGCGTGAGCGGGGATGAGCCGCGGTGAATCTTCGACCGGTCCGCCTTCTTCGTGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCAGCGGACGCGCCCTCAGCGACCACACCCATGTTTTCCCCGCGTGAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCGTGAGCGGGGATGAGCCGGTGATAGCGCCGCCGCCGGCCTCCCAGCCTTC # Right flank : TAGAACGCGCGCTCCACGCGACCCCACAAACGGGTTTTCCCCGCGTGAGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCGTGAGCGGGGATGAGCCCGCGCGTGTATACCACCGACAGGCCGGGAAGTCGTTTTCCCCGCGTGAGCGGGGATGAGCCCGACAATGGGTATTCTGGATGACATTGATAGCGGTTTTCCCCGCGTGAGCGGGGATGAGCCCATCGACTCATCCTCGGGGTGTGTGGGGACCTCGTTTTCCCCGCGTGAGCGGGGATGAGCCCTCGCAGCTGCTGTTCCACGGCGACAGGCCGCCGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCATGGCAGCCAATGATGAGCTCAGCATGAGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCGGACAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18240-18451 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18240 29 100.0 32 ............................. TACGGTGCTGAGCAGCACCACGGCAAGCTGAA 18301 29 96.6 32 ............................C GGCCCGCTAGGATGACGCAGCGCGAACAGGAC 18362 29 100.0 32 ............................. AAGCAGGTCACGGGCTTTGCTTTCGACACCGG 18423 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : ACATTGATAGCGGTTTTCCCCGCGTGAGCGGGGATGAGCCCATCGACTCATCCTCGGGGTGTGTGGGGACCTCGTTTTCCCCGCGTGAGCGGGGATGAGCCCTCGCAGCTGCTGTTCCACGGCGACAGGCCGCCGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCATGGCAGCCAATGATGAGCTCAGCATGAGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCGGACAGGCTGTCCGTACCCTCGTGTGGGGTGAGTTTTCCCCGCGTGAGCGGGGATGAGCCCTGTGACCGACGTGGCGACCACCCTAGGCCGCCGTTTTCCCCGCGTGAGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCGTGAGCGGGGATGAGCCCCGCCAGGCCTGGACCAGGGGAGCGCCGCGCCC # Right flank : GGATGGGAGTCCGATCTGGCCACTGTCGAACGCGTTTTCCCCGCGTGAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTTTTCCCCGCGTGAGCGGGGATGAGCCCATGGCTGCGAAATGTAGTCCATTCCGAGGACGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGTGCACCAGGGGGAGCAGGCTCTCCGTCAGGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCTGCCTGATAATGATCGGCGCTGACACGACGATGTTTTCCCCGCGTGAGCGGGGATGAGCCCTGGGTGACCGGGACGCTCGTCCCTGGCGTGCAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCGTGAGCGTGTGGGGTGACGCGGGAATGAACGTTTTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNN # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18608-18880 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18608 29 100.0 32 ............................. ATGGCTGCGAAATGTAGTCCATTCCGAGGACG 18669 29 96.6 32 ............................G GTGCACCAGGGGGAGCAGGCTCTCCGTCAGGC 18730 29 100.0 32 ............................. TGCCTGATAATGATCGGCGCTGACACGACGAT 18791 29 100.0 32 ............................. TGGGTGACCGGGACGCTCGTCCCTGGCGTGCA 18852 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCGTGAGCGGGGATGAGCCCCGCCAGGCCTGGACCAGGGGAGCGCCGCGCCCGTTTTCCCCGCGTGAGCGGGGATGAGCCGTACGGTGCTGAGCAGCACCACGGCAAGCTGAAGTTTTCCCCGCGTGAGCGGGGATGAGCCCGGCCCGCTAGGATGACGCAGCGCGAACAGGACGTTTTCCCCGCGTGAGCGGGGATGAGCCGAAGCAGGTCACGGGCTTTGCTTTCGACACCGGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGATGGGAGTCCGATCTGGCCACTGTCGAACGCGTTTTCCCCGCGTGAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAC # Right flank : GGCGTGAGCGTGTGGGGTGACGCGGGAATGAACGTTTTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCGTGAGCGGGGATGAGCCGGCGTGGGCGGCGATCACGGAGGCGTTCTACAGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCTTCGCGCACGGCGTCTTCGATCTCCCCCGTGTTTTCCCCGCGTGAGCGGGGATGAGCCGTCGCGGCCTTGGCGACGGCGAGCTTGGCGGCGGTTTTCCCCGCGTGAGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGTTTTCCCCGCGTGAGCGGGGATGAGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 19353-19625 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19353 29 100.0 32 ............................. GAGCCGCGGTATCTCATGCCGCGGCGTGCGTT 19414 29 100.0 32 ............................. CTGTCCTCCCGACCGCTGGATCTCCGCCCTGG 19475 29 100.0 32 ............................. ACGCTTGCCGTGAATGAGCAGGCCACCGAAGG 19536 29 100.0 32 ............................. AAAACGCGGCGTTCACGGGCAACTTCCGCGAT 19597 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : TTTTCCCCGCGTGAGCGGGGATGAGCCGGCGTGAGCGTGTGGGGTGACGCGGGAATGAACGTTTTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCGTGAGCGGGGATGAGCCGGCGTGGGCGGCGATCACGGAGGCGTTCTACAGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGCTTCGCGCACGGCGTCTTCGATCTCCCCCGTGTTTTCCCCGCGTGAGCGGGGATGAGCCGTCGCGGCCTTGGCGACGGCGAGCTTGGCGGCGGTTTTCCCCGCGTGAGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAT # Right flank : CTGGGCGTTGTGGGCGAACCGAACGACGACGTTGTTTTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCGTGAGCGGGGATGAGCCCGCGGCAGATACGCGCGCCGACTGCTCGGATAGGTTTTCCCCGCGTGAGCGGGGATGAGCCCTGTCACGTCACGCGCTCACCGCGTTCGATAACGTTTTCCCCGCGTGAGCGGGGATGAGCCGCATGGGAGGCCGACCTGACCGCTGTCGAACGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCTCTAAGCTCGCTTCCTACCTAGCGCGCTCGCTGTTTTCCCCGCGTGAGCGGGGATGAGCCGATCAAGAAATGAGACGCAAGGTAGCCCTGAACGTTTTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 19845-20117 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19845 29 100.0 32 ............................. TGTCACGTCACGCGCTCACCGCGTTCGATAAC 19906 29 96.6 32 ............................G CATGGGAGGCCGACCTGACCGCTGTCGAACGC 19967 29 100.0 32 ............................. TCTAAGCTCGCTTCCTACCTAGCGCGCTCGCT 20028 29 96.6 32 ............................G ATCAAGAAATGAGACGCAAGGTAGCCCTGAAC 20089 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : NNNNNGATGTTTTCCCCGCGTGAGCGGGGATGAGCCCGAGCCGCGGTATCTCATGCCGCGGCGTGCGTTGTTTTCCCCGCGTGAGCGGGGATGAGCCCCTGTCCTCCCGACCGCTGGATCTCCGCCCTGGGTTTTCCCCGCGTGAGCGGGGATGAGCCCACGCTTGCCGTGAATGAGCAGGCCACCGAAGGGTTTTCCCCGCGTGAGCGGGGATGAGCCCAAAACGCGGCGTTCACGGGCAACTTCCGCGATGTTTTCCCCGCGTGAGCGGGGATGAGCCCTGGGCGTTGTGGGCGAACCGAACGACGACGTTGTTTTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCGTGAGCGGGGATGAGCCCGCGGCAGATACGCGCGCCGACTGCTCGGATAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTTTCCCCGCGTGAGCGGGGATGAGCCGTTCTCCTGGGCGCTGTCGGAGCTGCGCCGTAAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGGCATGATCGTCGATCTGCCGCAGCCGAACACGTTTTCCCCGCGTGAGCGGGGATGAGCCTCGGAGCCGGTGGTCCGCTCATGGGGCGGCCTGGTTTTCCCCGCGTGAGCGGGGATGAGCCTACACCAGGCCTGAGCAGTCCAGGCCTGGCGGGGTTTTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTTTCCCCGCGTGAGCGGGGAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 20219-20491 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20219 29 96.6 32 ............................G TTCTCCTGGGCGCTGTCGGAGCTGCGCCGTAA 20280 29 96.6 32 ............................G GGCATGATCGTCGATCTGCCGCAGCCGAACAC 20341 29 100.0 32 ............................. CGGAGCCGGTGGTCCGCTCATGGGGCGGCCTG 20402 29 100.0 32 ............................. ACACCAGGCCTGAGCAGTCCAGGCCTGGCGGG 20463 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCGTGAGCGGGGATGAGCCCGCGGCAGATACGCGCGCCGACTGCTCGGATAGGTTTTCCCCGCGTGAGCGGGGATGAGCCCTGTCACGTCACGCGCTCACCGCGTTCGATAACGTTTTCCCCGCGTGAGCGGGGATGAGCCGCATGGGAGGCCGACCTGACCGCTGTCGAACGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCTCTAAGCTCGCTTCCTACCTAGCGCGCTCGCTGTTTTCCCCGCGTGAGCGGGGATGAGCCGATCAAGAAATGAGACGCAAGGTAGCCCTGAACGTTTTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTTTCCCCGCGTGAGCGGGGATGAGCCGAGGGTGAAGGGCGACCCGTCTAAGGCTGTGACGTTTTCCCCGCGTGAGCGGGGATGAGCCGTACTGGAACGCCGTCGGCAAGCCTGACTTCCGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGGGTCGTTGCTCGCATTATACCCGCCAGGATGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGAAAAGAGTATGGCACCCGATACCCAGACGATGTTTTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCGCGTGAGCGGGGATGAGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 20655-20866 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20655 29 100.0 32 ............................. TACTGGAACGCCGTCGGCAAGCCTGACTTCCG 20716 29 100.0 32 ............................. GGGTCGTTGCTCGCATTATACCCGCCAGGATG 20777 29 100.0 32 ............................. GAAAAGAGTATGGCACCCGATACCCAGACGAT 20838 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTTTCCCCGCGTGAGCGGGGATGAGCCGTTCTCCTGGGCGCTGTCGGAGCTGCGCCGTAAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGGCATGATCGTCGATCTGCCGCAGCCGAACACGTTTTCCCCGCGTGAGCGGGGATGAGCCTCGGAGCCGGTGGTCCGCTCATGGGGCGGCCTGGTTTTCCCCGCGTGAGCGGGGATGAGCCTACACCAGGCCTGAGCAGTCCAGGCCTGGCGGGGTTTTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTTTCCCCGCGTGAGCGGGGATGAGCCGAGGGTGAAGGGCGACCCGTCTAAGGCTGTGAC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCGCGTGAGCGGGGATGAGCCCGCGATCCGCCTCCAGGTGCAGGGCGCGCGCGAGTTTTCCCCGCGTGAGCGGGGATGAGCCGCACTCGCGTGTGGACATCCTCCAGATCACCAAGTTTTCCCCGCGTGAGCGGGGATGAGCCTCCGATGGACAGGCGGTCAATTACGCCGTCGCGGTTTTCCCCGCGTGAGCGGGGATGAGCCCTCATCAAGCAAAGCCTGCAACGCATCATTTATGTTTTCCCCGCGTGAGCGGGGATGAGCCGGTCGCACGCGTCGTGCGAGTGGACAGCGATCAGTTTTCCCCGCGTGAGCGGGGATGAGCCCGATCTGCTCAATCTGGAGATCGAGCTGCGTAAGTTTTCCCCGCGTGAGCGGGGATGAGCCCATTTCGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 21948-22525 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21948 29 100.0 32 ............................. TGGATCACCGACGCCTGGCGCGAAAGCATCCC 22009 29 100.0 32 ............................. CGTTGGCGACCCGCTCGGCCTCGGCCCAATCC 22070 29 96.6 32 ............................G CTGTAGTCAATCCACAACTGCTCGCCCGCCTT 22131 29 100.0 32 ............................. AGTGTTCGGCGAGCGGGGGACTGTATCTCCCG 22192 29 100.0 32 ............................. TCGACGCCCGCGCCCTCCTCATCCAGGGCGGC 22253 29 96.6 32 ............................T GCCCAGCTTTTCGGACATCTGCGAAATACGAA 22314 29 100.0 32 ............................. GAAAAAGGCCGCGCAGGCTGGCGCATCCCCGC 22375 29 100.0 31 ............................. GCTTTGCGGCGAGTGTGAGAAACCGTCCAGC 22435 29 100.0 33 ............................. CGGGGGGGCCAACCTAGTCCCCCGGTAGAAGGT 22497 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CGCGGTTTTCCCCGCGTGAGCGGGGATGAGCCGGTGACGACGTCCTTGTCAGAGGTTTCGGGCGAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGGGTCTAGAAGGGGTATAGAGAGAGTTTTAGAGTTTTCCCCGCGTGAGCGGGGATGAGCCCTTTACGTTCGGTCAGTAAAATAAGTGTGAGCAGTTTTCCCCGCGTGAGCGGGGATGAGCCCACGTGGGTTTTGTTGCCTCGGTCACTGCCGAAGTTTTCCCCGCGTGAGCGGGGATGAGCCGCATGGACCCGTGCACATCGGAGCATGGAAGGAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCGTGAGCGGGGATGAGCCGGACAAGCACCATACGTCGAATACATCTAACCC # Right flank : TGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTTTTCCCCGCGTGAGCGGGGATGAGCCCGGCTCACCACGTGGGCGCGAGATGTGGCAGTAGTTTTCCCCGCGTGAGCGGGGATGAGCCGGACAGGCTGCGCTACGAGGACTTCTACAGTGAGTTTTCCCCGCGTGAGCGGGGATGAGCCCCCTTGGTTCCAGCGGTAGAAACGGCCCGCTAGGTTTTCCCCGCGTGAGCGGGGATGAGCCGCGCCCGAACGGCCAGACACGCCCACCGCTGAGGTTTTCCCCGCGTGAGCGGGGATGAGCCCGTGAACCGAAGGTCGCCAGAAATCGGGTGCAGGTTTTCCCCGCGTGAGCGGGGATGAGCCCCAATACTCGTACAATGGGTGGGACTCCGGTCAGTTTTCCCCGCGTGAGCGGGGATGAGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 22692-23268 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952104.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22692 28 96.6 33 ..........................-.. GGACAGGCTGCGCTACGAGGACTTCTACAGTGA 22753 29 100.0 32 ............................. CCTTGGTTCCAGCGGTAGAAACGGCCCGCTAG 22814 29 100.0 31 ............................. GCCCGAACGGCCAGACACGCCCACCGCTGAG G [22842] 22875 29 100.0 32 ............................. GTGAACCGAAGGTCGCCAGAAATCGGGTGCAG 22936 29 100.0 32 ............................. CAATACTCGTACAATGGGTGGGACTCCGGTCA 22997 29 100.0 32 ............................. TCCCCGTCATCGCCAACGTCCCCGAACGCCTC 23058 29 100.0 32 ............................. GACGGTAAGGTTGACCTCACCGACGTGACCGT 23119 29 100.0 32 ............................. GGGAAGAACGCGCTCCTGGAGATCCGCGAGCT 23180 29 100.0 32 ............................. GGCCTGAACCCGGCGATGGTCACGGGCGCCGC 23241 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GTTTTCCCCGCGTGAGCGGGGATGAGCCCTCGACGCCCGCGCCCTCCTCATCCAGGGCGGCGTTTTCCCCGCGTGAGCGGGGATGAGCCTGCCCAGCTTTTCGGACATCTGCGAAATACGAAGTTTTCCCCGCGTGAGCGGGGATGAGCCCGAAAAAGGCCGCGCAGGCTGGCGCATCCCCGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCGCTTTGCGGCGAGTGTGAGAAACCGTCCAGCGTTTTCCCCGCGTGAGCGGGGATGAGCCCCGGGGGGGCCAACCTAGTCCCCCGGTAGAAGGTGTTTTCCCCGCGTGAGCGGGGATGAGCCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTTTTCCCCGCGTGAGCGGGGATGAGCCCGGCTCACCACGTGGGCGCGAGATGTGGCAGTA # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1853-1440 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952197.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1852 38 92.1 35 T........A..........A................. CCGAAGCACATCGGCTTCTGCTGAGACAGCAGCGC 1779 38 100.0 38 ...................................... AGTCCGAGTGCGTAGCCGACGATGGAGAGGAAGGCCAG 1703 38 97.4 37 .......T.............................. CGAGGAGCTGGTGACCGAGGCGAGCGACTTCAACGAC 1628 38 100.0 37 ...................................... CCACGTGTTGAACACCTGGCACATGTTCAGTGTGTCG 1553 38 100.0 38 ...................................... CCGGGCGTATAGTTCTTCCATGGGGGTACCCGATGAAA 1477 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 98.2 37 GGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAGCGCCAAAAGGTGCATTAAGACTTTCACGAACTCCTCATACGAACCGAATTGTTCGATCGGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACGGCGTCGTGCTCGATTATGTGAACACGCGGACACCATCGGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACTGAATGAACGGTTTGATCGCAGCGGTCATGATACGCAGTCAGAAAGCACCGAGCGCCAAAAGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAGCGCCAAAAGGTGCATTAAGACCGACGAACGACGCAGGCTTGATGCCCGAGCCGATCTCT # Right flank : GCAAACCCAGGGTTTTCGTCCACAAAGTCCGCGATAGGTCAGAAAGCACCGAGCGCCAAAAGGTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCACCGAGCGCCAAAAGGTGCATTAAGACACTGGAGGGCGACGGATGCCTGGATGCCCCGTCCTCGGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACTGGTTATCCTGGGTCGCGGTAGGCAGCACGATCGTGAGTCAGAAAGCACCGAGCACCAAAAGGTGCATTAAGACCCCCGGTAGACCAGCGCCTCCATAGGCGTGCGCCCCAGGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACGACAACCACGCGAACACGGCCAGGACAAGGATAATAGTCAGAGAGCACCGAGCACCAAAAGGCGCATTAAGACCAGGAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 3527-3186 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952197.1 Actinomyces sp. oral taxon 172 str. F0311 Scaffold346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 3526 38 100.0 38 ...................................... TGGTTCGCATGAATTGCAGATCAGGGTAGATTTCTGTG 3450 38 100.0 37 ...................................... GTTCAACTTAGGCTTGTCGTACACGGACTCCCTAACT 3375 38 100.0 37 ...................................... TTCTCCTTTCTTAGCGCTTAAAAGTGCAGTAGTAGCA 3300 38 100.0 39 ...................................... GCACCAACGCCTGCGGACACCTACGACCAACCGGCTCAC 3223 38 97.4 0 C..................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 5 38 99.5 38 GGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Left flank : TCGGCCAGGAGCGCGCGGGTGATGGTGTCAGCCGTCGTGAGAGTGTTCGCGTCGAGTGCGGTGATGCGTGGATGGACCCAGTCGCTCGCGGCGAGGAGGCGGACCTGCTCGTCGGTGAGGCTTCCTGACATGGGGGTGTTCGCTCTGGTGGGGTCCGGGTGTGCTGTGAGAAGTCTGCGTCTGGCGCGAGTGAGGGCCTCGGGGCTGGTTGCTTCTCTCAGGGACGAGGCCGTGGCAGGTGTCGTCATTGTCTGTCCTTCCACTCAACAACCTTGCAGTTACTCGCCAAGCGTCAAGCGTTATGGAGAAGCGACACGCCGATGATGGCGGCGATTTCCGGGACAGAGTCGGCCCCGCAGGCGTTCCGCGGCGATGCGAGCAGTCGCAACGAAAAGTCTGGTAATCTAACCTCGTGCTTGCTGGCCGGAGGGGTGCTTTTTCGGCCACTGGCGATCCGGTACGACGTTTTCCCTGGCCACAGGGGGTGCGACACGCCGGGC # Right flank : CTAATCAGATCGTTAGCAAGCGCAAACGCAATGCCAAGTCAGAAAGCACCGAGCGCCAAAAGGTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAGCGCCAAAAGGTGCATTAAGACTGATAGGACTCGACTTGCTAACTTTCGCTTTGTCGGGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGACGCCTGCGCGGCGATCATCGAGACGATGTAGACGCGAGTCAGAAAGCACCGAGCACCAAAAGGTGCATTAAGACCATGATGCCGCGCACGTCCTGCCGCTCCTCGATGGTGTGTCAGAAAGCACCGAGCGCCAAAAGGTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //