Array 1 30861-30094 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEIU01000003.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 30860 35 100.0 33 ................................... TTTTTCGCAATTTCCCCAATCTCCCGAATTCCC 30792 35 100.0 38 ................................... TCCTGATTGGGTGAGCCGATAGTATCTTTTTCTAGCAC 30719 35 100.0 37 ................................... GGCTGGATCCTTCACCGTCATTTTCGTCCCCAACAAT 30647 35 100.0 38 ................................... TGCTGCCCGTCTTGCTTTGAAACCTTTGATCCAGAAGA 30574 35 100.0 34 ................................... GGAAAGGGCCTTTTTGCGTCACAAACCCAGTCAC 30505 35 100.0 44 ................................... GTTTTGCATCCAACGCATATCGCCGGAAAAAGACGGCAATGAAC 30426 35 100.0 38 ................................... CGTTTGGGTAATTGGCATTTAATGCTAAGGTGGCGGGA 30353 35 100.0 40 ................................... AATGCCTGATAATTAGCTCTCCCGGTCATTTGTAAGGCAT 30278 35 100.0 41 ................................... AAATTTTAGCTTGCCTAATACGCTTAACTTCGCCATTTATT 30202 35 100.0 39 ................................... AATGTGTAGGGTTAATTCATGAATTAACCCTACAATTTT 30128 35 80.0 0 T..AA........A..T......C.....A..... | ========== ====== ====== ====== =================================== ============================================ ================== 11 35 98.2 38 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGCTGACAGGGGGACAAGAAGGCTGAAATCGATATATCGTAAGCTTTTCATTGTTTTAGCTCGACAAAGTTTGCCGCACCATCTCTCACTTATTAATAATAATTCCTAGTAAGCTAGCCCCTATCCCTAGTTCTTTCGTTAGCTTTTTGCCTAGAATTGCTAGATCTATTTCTAGTGAGAGAAGCCATAAGCCTTTGTTGGCAAGGTTTCTAGCTCGCTTGTCCCCCTGTCAGAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : GATGCTTAATTAATAAAAATCAATAAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTCTTAAACAATCGAGTTTTCTATAGCTTTATGTCCAAATATATAGCCATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCAACCACCGGCCTGAGCAGTACCACCTAATTAGCCCCGGACTCCTAAACTCCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAGTCGATAGCGAAATACAGTCCTCCTCCTCCGAGGAAATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAATA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 33778-33376 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEIU01000003.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 33777 35 100.0 39 ................................... CGTATATTGGATTGGATCCAATACGCTTTTGAGCCAAGA 33703 35 100.0 40 ................................... TCAAAGAGGCCTTCTGGCGTCCATTTTTGACAAAAAATGC 33628 35 100.0 37 ................................... GAGTATTGTCCGGTTTGGACGGACTTTACCCCAAATT 33556 35 97.1 40 ................T.................. GGCTAATTCATCCTCTAGCAAATCCCTCAAATCTTCCCAC 33481 35 100.0 36 ................................... CCGAAAAGCTTTACAAGCTTTTGGATGGCGGAGCGA 33410 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 99.5 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : GAGGAGGTGTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATCGATGAACCAGCGATCGCCAAGGAACTAGAAGAAATTCTCGGCATTATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTCCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACAAAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGAGAATTATTATTAATTATGGCTTATTTTTCAGTATCCCACGAAAAATCGTTGTACAATCCTTGTACGGCCTAGTTTTGCAAAGCTAGT # Right flank : AGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAAAAATTTCAGAGGAACTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTGGGCATCGTTTATAATAGCCAATTTCCTGGTCCACAACTCAACTCGATCGATCTCGATCGAGTTCTCCACTGGCTACAAACTCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCTGTAGGGGCGAAGCATTCGGATAGAAAATCTACGGTTTCACCGATAGGTTACTGCCCGAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 190353-190688 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEIU01000007.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 190353 32 100.0 46 ................................ AGACTACTCGAAACCGTCGAGCCGGATTGGGGAATAGCCTTGATGT 190431 32 100.0 41 ................................ TGGTGGTTCGATTGTCCATATCGACACCTACGATAAGAAGT 190504 32 96.9 46 ......................C......... GGTTGCGAAAATTTCAAAGGCACTTGGTTAGAATGGGTGGAATTGC 190582 32 100.0 41 ................................ GGCGATTACTTGGACAAGCGGACTAAATGAGGGGTTAACGT 190655 32 75.0 0 ...................T.T....TTTGCT | A,A [190669,190677] ========== ====== ====== ====== ================================ ============================================== ================== 5 32 94.4 44 TTCCAACTAATCCTATTTGACCTAATAGGTAA # Left flank : CATTATCAGGGTGATAGAGTCAAAGCTCATATCTTTTTATGTATGTTGGCTTATTATGTGGAATGGCATTTAAAACAGTGCTTGGCTCCTTTGTTATTTGAGGATGAAGAAATTGATGATAGTTGTCTGAATGTGATTAAAGCGAGTCGCAGTGAATCCGCTCAGTCTAAAGAGAGAAAAAAACGGAATCAAGAGAACCTCCCTGTGCATAGCTTTCGGACTTTGTTGGAAGACCTGGGGACAATTTGCTTGAATACAGTGGAATGTACGATTAGGGAGGGAAGTTATCGTTTTTCTAAGATAACTTGACCGACTGAACTACAACAATCATGCGTTAGATTTATTAGGGGTTTCCCTAATTTGTACCCAGTAACGGGGCGGCGGAAATTCTTTTAATCCCTCCTACAGCACAGGTTATGGCCTTTTGTCAACAGGGAAGTCCAGTAATAGGTAAGAGATAAGAGTAGGGCTAATTCCGGAATTAGCCCTACTTTTTTAGG # Right flank : TTAGGTACTTAACTATAAACGGGATTATTTCGGCCAAAGTTTTTGAAATTTTCCCGCTTGACCATTATTCTCGTCTAGAAAACCTAGAAAATAAGCACAATCATCAGAGTCATCAGGAAAAATTGTTAATAATTCTAGGTATTGATGATTATTTTTGGGATACATTCGATGCCAAAGACAACCAATTTGATCGATACTTCCTGTCACCGAGGTTTTATAGATACTTAAATTATCCAATTTTTGATAGGCTTTGTGAAGCCATTTTATGGCTAGAGAATCATCTTTATCTTCGGCAATTCTTCCCCAAACTTCGACATTTTTAGGATGCCAACTTTCTCGCCAGTTAGCACTATTATCGGGAGTTCTGAGGATATCTTTTTGTAAGGACATCCATTGTTTAGCAATAGTGCGAACATCTTTGATAAAGGGATGAACATGAGTTAAATCTCTGACTTTATTATCGTTGATTAAAGAACTTTTATCCCCCCATTGCCAATGAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCAACTAATCCTATTTGACCTAATAGGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 199006-198754 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEIU01000007.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 199005 36 100.0 36 .................................... ACTTTTGAGATTGACTGGGGAAAGGCTAGGATAACA 198933 36 100.0 35 .................................... CTGTTTGGGCCCTTAGTGACTGCATGGACCCTAGT 198862 36 100.0 37 .................................... TCATAATAGCAGGGATCATCTGCTTTGTCGCCACAGG 198789 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 36 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : GTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGTAGGATGGGTTAGCGGTAGCGTAACATAATCGGGCGTTGGGTTTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTATAAAGAAACCCTTTTTCTA # Right flank : AGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAGACCCCCAAATCGACGCACCTGCAAAAAGAGGGTTAAAAAGTGGTTCTGGGGGGGGTAAAATTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACGCACCTCAACCAGAGAATCGGGGTTTTAGGTCGGGGAGGGGGTGCATCGATTTTCAGTCAAGAGTTAGGGGACAAGCTAGATGATGTAGAGATTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAACAATCTAGAGACAGCTTCTTCGGAAATCCCATAGAAGCGCACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTCGATGTGTAATTAATTTTGCTTAAGTAATTATCTGTAATTAAGTAGCTGGTTATAATTAAATTAAAAATGGATTTTAGGTTCGATCCCCCCTGCCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 52662-51659 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEIU01000008.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 52661 36 100.0 37 .................................... TCGTCATAATTAATCTCCTTTTCCTGTTTGTCTATGA 52588 36 100.0 41 .................................... CAGTTTTCGCAAAAATAAGCCATTTTGTCGTCCGATAAAGT 52511 36 100.0 37 .................................... CTACTATAATAACCAATGGTTGTAACTAATCGAGGCA 52438 36 100.0 43 .................................... AAATCTTCTAAAGAAGCTTGGTAATTAGGAGCGCTTCGGGTAC 52359 36 100.0 36 .................................... CCAAGGGCAGTGCGAAGGCTTTCTCCAAGATTTCCG 52287 36 100.0 37 .................................... TTTTTTGTAAAGGATTAGAGTCAAATTCTTCGACATA 52214 36 100.0 35 .................................... TTTAAATCAATAGGAATCTCAAAAGTTGCAGATGT 52143 36 100.0 38 .................................... CTGATAAAGCTGCGCGATATTAGCCACATATTCAGCCA 52069 36 100.0 36 .................................... TTGCCCGATCCGATAGCACCTATCCTCGGCCTGGTC 51997 36 100.0 38 .................................... ACAGAAGCGTAATCACCTGTAACTGATTGCACTTCCCC 51923 36 100.0 42 .................................... CGACTCTTGAATTCTTTGACCGCTTCCTTGACTAACGCTTCG 51845 36 100.0 39 .................................... TTGATAAGTTAAAACAGTCCACTCTTTTACTTCTGCTAA 51770 36 100.0 40 .................................... TTTCAGAGAAAGATAACTCACCATCAGTCTTTAGTTGGTT 51694 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 14 36 100.0 38 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : TACTTCCGTTAATGCGTTGTGATCTTTCCCCGAATGGTAATTTTCCGAGGGATCGAGGGTTTGATAACCGACTCCGGGGTGTCGGACGAGGGTGGCGATCAGGAGCATAAGTCGCTGGAACTCGCGACTATCTCGTTCACGCAGTGTTCTTTCCCTAGGGGATTTGGGGTGCTGAGTCATACAGATGCAATCGGTTCAGTCAAGGGGAAAGCCGATATAAATTTACTTCACTCCGAGGGCTAGAAAATCCGATCAGGACTGGAAAAATTAGCCGCTCGATCGAGGGGTTAAATTATTGGCTTTTTAGGGTATCATCGACTAGCGACGGATAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACGGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : TGAATGGGCTGATCAGTGGGGATTGATAAATATTTCTCGGCCAGATTGCTCTGGGAATACTAATAGTGTCTATGGGAATTTGATCAGCAAGGGATTTAAAAAGCTAAAAATATCTTTCACTCCTTACGATCTCCGGCACTCTTGGGCGCGGCGATCTTTTGATTTCGGCATGGATGTTACCATGTCCTCTAAAATGCTCGGCCATAGTACGAAAATTCACACAGAAATTTATCGCCATTGGATAGATCGAGATTCTTTTAATCGAATCTACCAGCAACTTATTACTCATCCTGATCGCCCTTTACCACCATGCTAAAAGCTAAATATTGGTTCACTTCTGTTTTATTATCAATTATTCTTAATTTAATGTCTTTTATCGCTTACTACATAAGCCAAGCTTTAATGGTAGTATTCGATCCATCTAAAGAATGGATTTTATATTATTTTTCCTCTTTAATCGCGACTTTATTTGTAAATTTTACAATACTCTGTTATTTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 130145-142093 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEIU01000006.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 130145 37 100.0 35 ..................................... CTTATTTTGCCAACTTCCCCCCTCTAACCTTGATC 130217 37 100.0 36 ..................................... TCGATCGCCGGTCGGTCCGGTTCATCGGGGGGAAGG 130290 37 100.0 39 ..................................... ATGTAAACAATCGAGTAAACGAGTTACTAGCAAGGATTG 130366 37 100.0 35 ..................................... ATCTAGTTTTTTGGTAATTATGCCTAGTCGTTCGT 130438 37 100.0 35 ..................................... ACATCCTCGCTGCAGCATGATTGTGGGCAGCACTA 130510 37 100.0 35 ..................................... TGGGAACCGGGCTGTAAATTTGATGAGGCCTTTGT 130582 37 100.0 43 ..................................... ATAAACATAGGTAGGGCAGGTAGGGCAGGTAGGGAGAAAGCAT 130662 37 100.0 33 ..................................... ACTGCCATGACACTTAAATCGATGAGAGGAGGG 130732 37 100.0 35 ..................................... AAAAAGAAAATAAAAAAAGCTACAAAAAACAAGAA 130804 37 100.0 35 ..................................... AAGCCTTAAAATTTCATTTAAGATTTCCTGAGATT 130876 37 100.0 35 ..................................... TTTCAACCAATCGGCCACATCAAAACCTTTTTTAG 130948 37 100.0 36 ..................................... TACTATTAGGATTGCGAAAAACTTCTTTAATTGATC 131021 37 100.0 36 ..................................... GCGACCGGGATCGCCTTTTGGACCTTGAAAAACACA 131094 37 100.0 42 ..................................... CGCCATTTATCGAAGCCGTGGGGATAACCTAATAATTCCAAA 131173 37 100.0 37 ..................................... ACACATTGGGGACATGAAAACTAGGCAACTATTCCCT 131247 37 100.0 35 ..................................... TTTCAATCGAGCGAGTATTGCTTGAGTGCTTAGGC 131319 37 100.0 35 ..................................... AACAGCGCAAAAAGTCCCCACAGACTGCTGCCCAG 131391 37 100.0 40 ..................................... CCGATCTCTTTAAATCTCACTCTAGCCAAAAATGTGTTCC 131468 37 100.0 36 ..................................... CCTCTAAAAGCACTTTTTCTCTGTTTACGATAACGA 131541 37 100.0 40 ..................................... TTAAAATCTTGCCGATTTCTCGCAGCGGATACGGCCGCAC 131618 37 100.0 34 ..................................... ATTGCTTACATATATTTCGATATAATTCGGCTTG 131689 37 100.0 34 ..................................... CCTATTGAGGAAGATGAGGAAGACGAAGATGATG 131760 37 100.0 33 ..................................... GAACTCTAGCGATTGCGAGGACGGCGAAACCGT 131830 37 100.0 39 ..................................... AAACAACCACTTTAGCAAATTAGGTGATTTACTTAAAGT 131906 37 100.0 42 ..................................... TATTTAAAGACTTTTCGATCCCTTTAGCAATTTGCGTCCCAA 131985 37 100.0 34 ..................................... TTTTAGAAATTCATCCTAATCTTGATTAAATCCT 132056 37 100.0 36 ..................................... ATCCCCTCACCTCTCAGTCCATCCCCTCACCTCTCA 132129 37 100.0 31 ..................................... TTGATCAATTAAAGTTACTGGATTGTCAGTC 132197 37 100.0 34 ..................................... CCTTCAAAACTTCGGTTTGAACGCTAGTTAAATA 132268 37 100.0 35 ..................................... AAGCGAGGGATTTAGGACTTGAGGAAATTGAACAA 132340 37 100.0 35 ..................................... GAATAGTTGAAGCGCGGGCATCTAAATTAGAGAGG 132412 37 100.0 35 ..................................... GGAATATCCTGTAGATATGTACTTTTATAAAGAAA 132484 37 100.0 33 ..................................... ATAAGTTTGGGGTCAATCAGGGCTATTCTAAGT 132554 37 100.0 36 ..................................... GGGGCATTAAGCAGATATACCCGAACGATGATGATG 132627 37 100.0 34 ..................................... GATATTCCAGGACAAGCAACGGCGGCGACTTCTT 132698 37 100.0 35 ..................................... GCGGGAAAGATTAATCAAACTTTGGATAAATACGA 132770 37 100.0 35 ..................................... TGATCTTAGTGGCACTAAATCAATTCAGGCAAATC 132842 37 100.0 34 ..................................... AATTTCCAGCACGCGATCGGCAATCACAGACCTG 132913 37 100.0 33 ..................................... TAATTAAGAGAGTTTTTTAAGTAAATAGGACAA 132983 37 100.0 34 ..................................... AAAGGCTCAATTAGGCAAAAATCCTTTAGCTAAA 133054 37 100.0 35 ..................................... GGCTTAGACTACGATGGGCCAAGCATCCCCCTGAA 133126 37 100.0 34 ..................................... TTTTGGGGAGAATTTAGGATGATTTTATTATAAA 133197 37 100.0 34 ..................................... CCAATCATCCTCAATCTTAGCGGCCTCCACATAA 133268 37 100.0 35 ..................................... TCACCTTCACCGCCACCCCCGACAAAGAAAACCAG 133340 37 100.0 35 ..................................... AATTGGAGAATATCGGTATCTTTGAGGGTGCGCTG 133412 37 100.0 34 ..................................... GATGAGATGAAGGAGCACTCTAAACAATACGATA 133483 37 100.0 36 ..................................... ATCTAAGTATCGCCAGACAGCCCATCCTAGAAGCTT 133556 37 100.0 37 ..................................... AATACCTATTAATATTGTTACGTCCATGCTTTTAAGT 133630 37 100.0 34 ..................................... TATAGACACAGCTATAGAAGACTATAATCCAATT 133701 37 100.0 36 ..................................... ATCTATCGCAAAAACTTCGCTGATTTTTCCGCACCA 133774 37 100.0 38 ..................................... TTGTGCAGAAGAAACTGACTGGAAGTATGTAGCTGGAA 133849 37 100.0 35 ..................................... AATGCCTTATAGAGGAAAAAAGAAAATAGAGTAAA 133921 37 100.0 35 ..................................... GCGATCAATCCCGATGGATCAGTGGAATACCAGAT 133993 37 100.0 35 ..................................... AAGCTTTACAAAAATTAATATTTTTAAATAACCAT 134065 37 100.0 36 ..................................... CATCGGTGTGACAGGTGTTACACCCGCCAAAACCTT 134138 37 100.0 38 ..................................... TGAATACTTGCGACTAAATTATTAAGATTAGAAATACT 134213 37 100.0 34 ..................................... TTTGAGTTGATGGGGACTGAAAATCCTGTAGAAG 134284 37 100.0 39 ..................................... AGAGATAAAGGTTTTGCCGTAGCTTTTGAAGCGGAACAA 134360 37 100.0 35 ..................................... TTTGAAGAAATTGGGCAGAGAGTTGTAGAAGGATT 134432 37 100.0 37 ..................................... AACTTCGGTGACTGGAAGTGCCGAAGCCGGAGCTAAA 134506 37 100.0 35 ..................................... CTGCCACTGGGCCGGGATTGATTTTCTTGCCTATC 134578 37 100.0 37 ..................................... AGCTTTAATCCAGCTTCTGCGCTAGATTTTATTAAAA 134652 37 100.0 35 ..................................... TTGAAGTGGAATCTGGGGAATCCCAAGAAATTATT 134724 37 100.0 36 ..................................... CGTTACCTCGGTATTTTCTCGGCGGCTTTATTTATT 134797 37 100.0 35 ..................................... ATGGCCGGCGATCGGAAGGGGTGGAAATGTTCGAC 134869 37 100.0 33 ..................................... TGTTGAAGAAAAATTAGATTTAGGGATTACCTA 134939 37 100.0 35 ..................................... CAAAAAAGCAATAAAAGCCATTAGTAACTCGTTTT 135011 37 94.6 36 .C.....................C............. AACATGAGCAGTAAACCACCGATCAGCTTCCGACTT 135084 37 94.6 36 .C.....................C............. TTTTATTGCATGGATGCAATCCTTAGAAGCTTGCGG 135157 37 94.6 40 .C.....................C............. TCCCGGCCCAGCCAAAAATCATCCCATCTCGCTCTACAGG 135234 37 94.6 35 .C.....................C............. ATAATTTTTAGCGGCCTATCAGGCAATTTTCCCGG 135306 37 94.6 36 .C.....................C............. GCTGTCTATCTTGCCTAGTTCTTTCCCCTTACCAGT 135379 37 94.6 35 .C.....................C............. AGAGTAGTAAGGAAAGACGACGGTAACGGCAAAAG 135451 37 94.6 36 .C.....................C............. ACTCAGTAGGCGAGGTGACAGTCTGTAAGCGCAATT 135524 37 94.6 35 .C.....................C............. ATTTGATAGCCGATTAAATCGGTCCCGGACTCGAA 135596 37 94.6 35 .C.....................C............. CTAGTATTCAATCTTTTCATATTGGCTACCTAGCT 135668 37 94.6 34 .C.....................C............. TTGATAAGGTTCAGGCATCCCTGCTTCCCACATC 135739 37 94.6 35 .C.....................C............. TAAATTATGCTATCATCCAATTCTGTTTCTGTCAA 135811 37 94.6 37 .C.....................C............. TGATAGCTCGATCAGTGCTTAAATTTTTGTACATGGG 135885 37 100.0 34 ..................................... TAACGGGCTTATCCCAAATCGGACGATCCGTAAC 135956 37 100.0 37 ..................................... AATGGTTTGCGGCGATGCTTCGCTACTTTTTTGATGA 136030 37 100.0 36 ..................................... ACGACCAAATTTGGCCAGCGCATAGTAATTGATGCA 136103 37 100.0 42 ..................................... ACAAAGAAAGACGCTTTAGAATCCCTCTATGGACTGTTCCAA 136182 37 100.0 36 ..................................... AAGTCAAAATGACCTGGAAAAAGTTTTTAACGGACT 136255 37 94.6 35 .C.....................C............. GGCTGCGGCTGACTTGACAATCGAGCCTGCATTTT 136327 37 94.6 35 .C.....................C............. TGTCGGTGAAAAGGCTTGCTACATAAGGCTTTCAA 136399 37 94.6 34 .C.....................C............. GCCATAAGTTTTAAGTGTAGGATAGTATAATATA 136470 37 94.6 39 .C.....................C............. TACAGTTAGCAAAAGACTGTAAACTTATCAGTACACAAG 136546 37 94.6 36 .C.....................C............. AAAGGCTTAGGGAACACCAAAAACCAAAGAATAACT 136619 37 94.6 34 .C.....................C............. TTGTGAATACTGCAATAGCCACAATAGATAGAAT 136690 37 94.6 33 .C.....................C............. AGGATTGCTAATAAACTCTTGGCGGGCAAAATC 136760 37 94.6 34 .C.....................C............. TTAGGATCAATCCACCAAGAGATAAAACTAGCTA 136831 37 94.6 33 .C.....................C............. CATACTTTAACCCCTTCTTTAATCTCGAAATCT 136901 37 94.6 33 .C.....................C............. CCGTGCCAGTAAACCCATTATCAACAGCCACTT 136971 37 94.6 36 .C.....................C............. ATAGTCCTTGCTCCTATTGAGTTTCATGCTTTTATT 137044 37 94.6 34 .C.....................C............. AAGATTTTGAGTTCATCATCTAAATTATCATCTA 137115 37 94.6 35 .C.....................C............. TTGTATCGCTAAAAAAACGATGCCGGGCAGATGAC 137187 37 94.6 40 .C.....................C............. GTGAATGCCGGTTATTTCGCATAATTTTGTATTTGCGCTG 137264 37 94.6 35 .C.....................C............. CCGGCATTGGGGATTCGGATTGCTCCTTGTAAAGA 137336 37 97.3 40 .......................C............. TGATACGCGTATAAAGCCAATCGGGGCTAGATCGCCTGAT 137413 37 97.3 35 .......................C............. GCGTGCCATAGTTGTCTATCCGTTGTCTATCTGTC 137485 37 97.3 36 .......................C............. GATAATGGGTTTACTGGCACAGAACAAGATTGGCTT 137558 37 97.3 35 .......................C............. AACGTGCCATTCTACTCCTATTGTAGTCCATAAAG 137630 37 97.3 36 .......................C............. AAAGAAATCCCCAATGATCAGATAGAGTCTTTCCTT 137703 37 97.3 36 .......................C............. GGTGTACTCAAACGGATACATGGGATTAGTGTAGTA 137776 37 97.3 35 .......................C............. TTAAATCGTCTAAGGAGAAATCTGAATATTAAAAA 137848 37 97.3 36 .......................C............. CCGATGCCTGATACCCAATGGGCAGAAATTCCTGTC 137921 37 97.3 35 .......................C............. AAAACCCCCATTGTATCTGGTAATTTTACTATGAT 137993 37 97.3 35 .......................C............. AAATTATCGGATGACCTACCTAGCGCGTATGCAAG 138065 37 97.3 34 .......................C............. ATTAAAGATTTCGCGGCTTCCACATTTGAGCCGA 138136 37 97.3 35 .......................C............. ATCTTCCTATCGGCCACGGAATCGATCGAGAATTT 138208 37 97.3 41 .......................C............. GGCCTCATGCCTTTCTCAACGACTGTTGACATTAGAAAAAA 138286 37 97.3 41 .......................C............. ATCAATATCTTTGCAGTACACCCGCCGTGTATGTGGCGATC 138364 37 97.3 36 .......................C............. GAGCGATCGCCACCACCCTCTATCTCTCGGCTCAAA 138437 37 97.3 36 .......................C............. TTTTATAGACAGTGACCTGATTAAAAAGATTTTCTT 138510 37 97.3 35 .......................C............. AAAGACCTCTAGGAGGGCCTCAAATTCCGTTAAGA 138582 37 97.3 34 .......................C............. CCCGTTACTCATCCCTTTGCTACCCGCCCGCCTT 138653 37 97.3 36 .......................C............. CCGGCATTGGGGATTCGGATTGCTCCTTGTAAAGAA 138726 37 97.3 35 .......................C............. CCGGCATTGGGGATTCGGATTGCTCCTTGTAAAGA 138798 37 97.3 40 .......................C............. TGATACGCGTATAAAGCCAATCGGGGCTAGATCGCCTGAT 138875 37 97.3 35 .......................C............. GCGTGCCATAGTTGTCTATCCGTTGTCTATCTGTC 138947 37 97.3 36 .......................C............. GATAATGGGTTTACTGGCACAGAACAAGATTGGCTT 139020 37 97.3 35 .......................C............. TATCTGCTAAAAGATTTATAATCTTTATTGGTCTA 139092 37 97.3 35 .......................C............. GTAGAAAATTGGTAGAGATAAGTAGCCGCGCCACT 139164 37 97.3 35 .......................C............. CGATAACAAGCCGATTAGCAATAGTTTTAGATGCC 139236 37 97.3 34 .......................C............. ATCAGTTACCAGCGATTATCAAGTAATTAGGAGT 139307 37 97.3 34 .......................C............. CATCTAGATCCCGCTCGCAGATAAGAACTGCTGA 139378 37 97.3 36 .......................C............. AAGTTCCCAAAAATCACAGCCCCAAAACCTTAAAAC 139451 37 97.3 37 .......................C............. ATTGAAAATATGAGTTCTAAACCGCCCCCACAAAGCC 139525 37 97.3 32 .......................C............. GAGTAAATCGATGAACCTATCTACTATTAAAA 139594 37 97.3 39 .......................C............. ATATTCTGGGATGATGATAGTAGAATTAGAATTCTCGAA 139670 37 97.3 34 .......................C............. ATCTTTTGGTAGCCACTGGCAGATTAAATCTTCT 139741 37 97.3 35 .......................C............. TTGGCTTTTTGCCAATTCCCCAAAAGCTTGTCTTT 139813 37 97.3 34 .......................C............. TTAAATCACTATATTCCGATTCACTGGCTAACCG 139884 37 97.3 35 .......................C............. CTAATATTTCCCGTGTTTTGGATAGAATAAGTGTT 139956 37 97.3 34 .......................C............. TAATCGATAGCCTATCTGCTCTAATTCACGTTTT 140027 37 97.3 35 .......................C............. GCGGCGATGCTTAAGGCTTCTCACTTCCAAGAATG 140099 37 97.3 37 .......................C............. AGTAACCATTGATCATTAATAGGAGTAAAAAATGTCA 140173 37 97.3 35 .......................C............. TCACTCACCCCGCTTTACTAGCATATCACACTTTC 140245 37 97.3 33 .......................C............. GCGCCAATTAGGAGGTGGCGATGAATGCAAAAT 140315 37 97.3 37 .......................C............. TCCCCATTTTCCCATCTGACAATAGTTTTCGGGTAGG 140389 37 97.3 35 .......................C............. ATCGAAGAGCTACACGCTGAAAAAGAGCGTGATAT 140461 37 97.3 35 .......................C............. TCGAGTCTTGATTTTTTCCATCTTGATAATCCATT 140533 37 97.3 35 .......................C............. TTTCCCGGGTTTTCCGTCGTTTCCGGGCTTCCCGT 140605 37 97.3 38 .......................C............. GGGAATCAGAATATGATGGGAAGGCTCGCCGGGTGTGG 140680 37 100.0 34 ..................................... TAAGTGCGTCCCCCTTGAGGGGTTTTCCTTTCTC 140751 37 100.0 42 ..................................... ATCTAACTCATTATCTAGGCTATCATCTGAGTTTTCATCTAG 140830 37 100.0 34 ..................................... TCAAGGAATAATCAAGCAAATGCCCGGCAGAAAA 140901 37 100.0 35 ..................................... TAATTGCCTGAACGCTGTATTGCAAGCTCACCAAA 140973 37 100.0 35 ..................................... CCTTTGGTAACAGTAAAGCCTAAAGCTGTAATAAG 141045 37 100.0 36 ..................................... CTGCGAATATTTTTATAAGCACCATACATAATATGC 141118 37 100.0 35 ..................................... GATCTATTTGTTGGTCGGTGATATTCCAATTAAAA 141190 37 100.0 34 ..................................... TTCATATTTTTGTCCCCATTTGTAAACAAGAATT 141261 37 100.0 35 ..................................... AGACCAAAGAAGCATTAAGAGGGCATAATCCCTAA 141333 37 100.0 36 ..................................... AACGATTTCTTTAGAAATCTCTAGGGAGGGTGTAAT 141406 37 100.0 38 ..................................... TGCCATACTTATACTCCGTATTAGTCTCCGGCTCCCCC 141481 37 100.0 35 ..................................... TTGGCTAGAGACCCGGCAATTTATATACAAGGGTC 141553 37 100.0 36 ..................................... TTCGCTCTCAAGCTCTTTAATTCGGTCTTTTAAGCC 141626 37 100.0 33 ..................................... TATAGAGCGTTAACAATATCTACAAAGTCTGAA 141696 37 100.0 35 ..................................... CTTGAGTGACAGGATATTTTCCAATCGCGAAAGTT 141768 37 100.0 37 ..................................... TCCCAATAAAACAATAACCATCCTCTCCATCATCACG 141842 37 100.0 34 ..................................... GAGCTAGAGAATTTCACTCGCAACCTGGGGGGAG 141913 37 100.0 35 ..................................... TACTTTGGCACTAAGAACAAGATAAACACTAAAGG 141985 37 100.0 35 ..................................... ATTATCTTTATATTCTTCATCCCAGTTAACGGTAT 142057 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 165 37 98.4 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTATCAGTTACGACATTTCCGATGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCCAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTATGATTGGTTTATTGCGGGTGCGGCGCATACGAACCTTGAAAACCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : CTGGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATAAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCCCCATACCTATTACCTAGCATCATTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCTACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCTTGGCTAAAAT # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //