Array 1 6227-9292 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSUQ01000025.1 Acidibacillus ferrooxidans strain SLC66 contig0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6227 36 100.0 30 .................................... ACACGCCCGTGGCGGTGTTGGACGGTGTTT 6293 36 100.0 30 .................................... TCTACGAACGGTTGGATGATCTCGAGGTTT 6359 36 100.0 30 .................................... TCTCGAGCTCTTGAAGATAGGATAGTTCTA 6425 36 100.0 30 .................................... ATTGCAATCAGTAGTGTTGGGAGCATTACG 6491 36 100.0 30 .................................... ACTATGTTGAGGCTGTTAACCCTGCTTATG 6557 36 100.0 30 .................................... AGTGTTGCTTCTGGCAATTCAAGATCATAA 6623 36 100.0 29 .................................... TCCAGAAAACAGCTTGCAAGCATTGCAAA 6688 36 100.0 30 .................................... ACGACTACTACGATCCTGAGTCGGAGAAGA 6754 36 100.0 30 .................................... CCAGATTGCGTGATCGCAAGTGACTGGAAT 6820 36 100.0 30 .................................... CCATTGATTCGGCCTTGTTTTATCGCTTCG 6886 36 100.0 30 .................................... ATAGGAGCCGGAACTGTAACAAACTCTTCT 6952 36 100.0 30 .................................... CATGGGGTTTCCTTCTTTCGGGTGGTTTGT 7018 36 100.0 30 .................................... TAACGGTTCCAAGACTGTCCACGATCTCCG 7084 36 100.0 29 .................................... ACACTGACCGATATCCACACAGGCGATAC 7149 36 100.0 30 .................................... TTGAGACTCTCATGATCGGTTGGTCAATGA 7215 36 100.0 30 .................................... AAGATCTTTTGGGTTGTCATAGGACAAATG 7281 36 100.0 30 .................................... GTCACGCAAACAATAGGGCTTGCGGATAAC 7347 36 100.0 29 .................................... GGAACTGCAACAACGGCGAGTGCTACTGT 7412 36 100.0 30 .................................... ATAGGAGCCGGAACTGTAACAAACTCTTCT 7478 36 100.0 30 .................................... TGCATCAACCCTTTGACCGTTTGCGCTACG 7544 36 100.0 30 .................................... AATAACGTGGTGGCGGCGATTAACGGCGCG 7610 36 100.0 29 .................................... TCGCTAGCACATCCGCACTGCTGTCTGAT 7675 36 100.0 30 .................................... AGCGCACGTCGAATTTGTTGCCGCGATGAA 7741 36 100.0 30 .................................... CTGCATTTGTCACGCTAGGATACGCTTTGT 7807 36 100.0 30 .................................... CCCCGGCTGCACGCCTTTTGCAACCCCACT 7873 36 100.0 30 .................................... TACACGTTTGCGATACAAAATGCAGAAGGG 7939 36 100.0 30 .................................... ACCCGGCTGGATCAAGTCAAGTCCCGGCAG 8005 36 100.0 30 .................................... TACAAGTAGAAAGGGGCGTGAAGTATTTGA 8071 36 100.0 30 .................................... CATCTCTGTCGCTTTGTTCGCGCCAGACGC 8137 36 100.0 29 .................................... TCTTCTTCGTCGACATCCAACTCTTGGAG 8202 36 100.0 30 .................................... CGTGGAGGCTGTCTAGGATCGCGCGATGGC 8268 36 100.0 30 .................................... CGCATCGGCGTCAAACCCGCGGACCTTGAA 8334 36 100.0 30 .................................... AGTAGGCGATCCGATGTTAAACCCCGTGCC 8400 36 100.0 30 .................................... TCTATAAAGGCGGTAACTTTTTAGTACAAA 8466 36 100.0 29 .................................... CTGAGCTCGTGGAACGTTTGCGCGTGCCC 8531 36 100.0 30 .................................... CATCAAAGCGATGGGTGTTAATTTTTCGAT 8597 36 100.0 30 .................................... TTGCGGTCACATCAGGAATTTACAAAGGAC 8663 36 100.0 30 .................................... ACCAGTCTTGAAGAAGAGATGAAACGAGCA 8729 36 100.0 30 .................................... TGCGGTCTCCGTGTATTGTGTACATTGACG 8795 36 100.0 30 .................................... CGGAGAAGACAAGATAACAAATTGATCGCC 8861 36 100.0 30 .................................... ATGGACAAGCAGAGTCTTTTAAGAGGTCGC 8927 36 100.0 30 .................................... CGGGGCTCATCCCTCGATCAGGCAACACAA 8993 36 100.0 30 .................................... TTCATCACCGCGTCATCGACAACAATCGGC 9059 36 97.2 30 .............................T...... AAGTAACTTATTCTCGTCAGGATACAAGTT 9125 36 100.0 30 .................................... AGATGAGGCGGGCGACCGAGTGGGTGGAGC 9191 36 100.0 30 .................................... TCTCCGCGTTCGATGTTCGCGACGGACTGC 9257 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 99.9 30 ATTATACCACATCGAGAACTACGAGGGAGCGATAAC # Left flank : CAAGCTTTACTCATTCAATTTCAACCCTAGACCCAGGAGACCTGCTTCTGCCATCCATCACAGCGATTAGGACGGAGGTCTATGAGTAATTACATGAGACTTCTCGTATTGTTCGATTTACCTGTCGGCACGGGGCTCGAGCGCAAGGCAGCGTCTCGATTCCGTACTTTTCTACTCACAGACGGCTACTACATGATTCAATTTTCATGTTACTGTCGAATTTGCGGGAGTTTCGAGATAGCCGATAAGCACGAACGTCGTTTAGAAGCAAACCTACCAGTAAAGGGGTCGGTCCGAAGTCTAGTTGTGACGGAGAAGCAATTTTCAAGAATGAAAATTCTTGTGGGAGAACACGTCTCCAATGAGGTGAAAATTCACAGTGAGCAACTTGTGCTTTTTTGAAAAACGACTGAGCATAACCTTGTGGATAGTTCCCAAGTTGCTTTTTAACTCAAAAAAACTGCCAAAATACCCTTCAAAAGCGGGATTTTAGCAGAGGT # Right flank : CCTGGTTGGACAGCAGGAAATTGTCTTTGATATTATACCACATCGAGAATGGAACAGTATCATTTTAGTTGAGTCGACAAACTCGTAATTCTGGACAGAATGATAAAAAAAGGAAGAAGGAATCCAGATGCGAGTGTACGATAAAGAATTCAAAGAAGAAGCATTAAAATTATCTTATGAAATCGGGCCCACAGCGGCCTCCGAACAACTGGGGGTTCCACCCACAACGCTGTACACATGGAGGGGTCAAAGCAAGAAGCATGGATCCTTGGCATTTGTAGGGAGTGGCCACCAGCGCATAGATCCGAAAACTGCCGAAATGAAAGGGTTGGAGAAAAAGATCAGGGAACTGGAATCCGCCAATGATATCCTGAAAAAGGCGTTAGCTTTTTTCGCAGAGAGCCAAAAGAGGTAGCTGCACGAGACTTGTTTCGTTTTATAGGGATTCAAAAGAAAAAAGACGAAGCCAAGCACAGTGTAAAGGAAATGTGTAAGGTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACATCGAGAACTACGAGGGAGCGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //