Array 1 90021-87896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXOI01000006.1 Xanthomonas translucens pv. arrhenatheri LMG 727 isolate LMG727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 90020 31 100.0 34 ............................... TTGCTGTCCGCGGGGGTAATCTGCACCCGTAGCG 89955 31 100.0 35 ............................... TTGTCGGGGAAAATTGCTTGCAGCGATACGATGCG 89889 31 100.0 35 ............................... ATATTCAGGCTCGCCGGGATAACCTGTATGTTACT 89823 31 100.0 34 ............................... CGGCTATCAGTTGCGCGGTCTGCAAGCGCGACTG 89758 31 100.0 36 ............................... TGGACGTATTCATTCCCAAGCTTGTCGCACTCGGCA 89691 31 100.0 34 ............................... CGAAGATGGGTTTCATCGACACTGAAAACGGCCG 89626 31 100.0 36 ............................... CGAGCGCCAGGAATGAAATCCTTGTCGCGCCCCATC 89559 31 100.0 34 ............................... GGCACCTGCGCCTGGCGCGTTGCCTTGGTTCCAG 89494 31 100.0 34 ............................... TGCTGTTGCTGGCTGGCGATCAATCCAAGAATCC 89429 31 100.0 34 ............................... GCCCATCCCACGTTACGTTTTCCCACTTCAGCGG 89364 31 100.0 34 ............................... AGCAACCCCGAAGGCGTAGCGCGATCAGTGACAT 89299 31 100.0 36 ............................... CTGCACGCGCTGGCCGCAGCACAGCACAAGCCGGAT 89232 31 100.0 34 ............................... TTCGTTACAGGGCCACGTTGGAGTTGGCCCGTAA 89167 31 100.0 35 ............................... ATCCAGCCAGTCGGACCAGCTATCCATGGCCTCCC 89101 31 100.0 34 ............................... CGCATTACCGCATCACGCAAGTCCTGGTGCGCGT 89036 31 100.0 35 ............................... CTTCGTTGGATTTCCCGACGCGCCATTACCGCGGC 88970 31 100.0 35 ............................... GGTCGCTGCCCCTCAATGCTGCACCGGTAGCCCTG 88904 31 100.0 35 ............................... GCGAGCATCCAATCGACAGCCGAGCCGACGATAAC 88838 31 100.0 34 ............................... GGGCTATCCACCACCAGCTCAGGCGTCGTCAGTG 88773 31 100.0 33 ............................... ATGGCATTCATGGTGGCGTCGTCTGCGCACCAG 88709 31 100.0 34 ............................... AGCCGTTGATTCGTAGCCGTCGATTTCGTCGCAG 88644 31 100.0 32 ............................... ACGTACCGCTGGCGCGCTTTTCGTCCATGAAC 88581 31 100.0 34 ............................... CAGTCGGGCTTTGCGCCCACGGTATGCGCGTAGA 88516 31 100.0 35 ............................... TGGTTGGGCTTTTGCATGAAGGCCTGGACGAATGC 88450 31 100.0 35 ............................... TCGGCATCAGGTTGCGCAGTGCAGCCTGCGAGGCT 88384 31 100.0 34 ............................... TGCCTAGCGATGCGGTAAACCTTGACGTACCGGG 88319 31 100.0 36 ............................... ATCGCGGTCTTGCTTGCTCATGGCGGTGTCCCTCTG 88252 31 100.0 35 ............................... GCATTACCGGTGTAATGTAACACAGATCTTCAAAC 88186 31 100.0 34 ............................... TTGCTGCGCGGCCGGGTTGTTGACGATCGCCGGC 88121 31 96.8 33 ....................C.......... CATGTGGCTTGCCCGCATTGTGGCGAGCACCAG 88057 31 100.0 34 ............................... ATCGGACGGCACTCTCTGGAGGCTTGGAGCTATC 87992 31 93.5 34 .............C......C.......... GCGTTGGCAGTTCGTCGCGCTGGTGAGTTTTAAG 87927 31 83.9 0 .....T.......C.A.C.......C..... | G [87900] ========== ====== ====== ====== =============================== ==================================== ================== 33 31 99.2 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGTCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCGGGCGTCGACAGCCTTCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCACGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTTGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCCGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTAAAAGAAAAACACCAACCTCTTCCGCTTGCTGGCATGTCCGCGGAAGCCGAATTCGATTGCGTCTCCTAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAACACCCATAAGCATTTATGCTCAGGGCC # Right flank : TGACTTGGCGACGCCGTGTCGTTCTATCGCCTTTTCCCACAAAAAAAGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTCCCTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCCGCGGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGGTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACTGAGGCGACCGTCACCGTGCCTGCAGTGGCCGCGGCCGGCGCCGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //