Array 1 493518-495315 **** Predicted by CRISPRDetect 2.4 *** >NZ_DACWUI010000001.1 Salmonella enterica subsp. salamae strain CCUG30039 SAMEA7114072-rid11198973.denovo.01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 493518 29 100.0 32 ............................. GCTCAAAAATCAGTTACAGACAATACTAACGC 493579 29 100.0 32 ............................. TCTTTGACGCTGGCAATCGCCACGTTGTAGAG 493640 29 100.0 32 ............................. CTGCATACTCCAGCAATTGTGCGGCGGCGTTC 493701 29 100.0 32 ............................. GCCCAGGTCATTTTTAATGAGGAATGGATAGT 493762 29 100.0 32 ............................. ATCCGCTGAAATCCCGGTGGATAACATACCGA 493823 29 100.0 32 ............................. AGCTGCGGGACGTTGAAAAGGACGGCTGCGGC 493884 29 100.0 32 ............................. CCAGTTCTTGGCCTCGTAAATATCGCCCTGTT 493945 29 100.0 32 ............................. CCAGATACCGCGATCTGTGCGAAAGCGTTTAT 494006 29 100.0 32 ............................. TAACTTTGTGTCGCTGCATACGGCAAAGAGTA 494067 29 100.0 32 ............................. TTGACGTAGTTAGCGTGGATGATGTCGGTTAT 494128 29 100.0 32 ............................. GGGCGACCTCCGTTAAATTATTTATTTGAAGC 494189 29 100.0 32 ............................. GCTTTGGCCTACATTCACTGCAAAACTTTGCT 494250 29 100.0 32 ............................. AAACAACGCTGTCCCAGATGCCGATGACGGAT 494311 29 100.0 32 ............................. TTCATCCATACGCTCACTGAATCCACGCTCCC 494372 29 100.0 32 ............................. CTACATTTGGGGGCTATCTATTCACACTCTGT 494433 29 100.0 32 ............................. GAAAAACCGGATGTACAGGACGGGCTTGCTGC 494494 29 100.0 32 ............................. CGGCTGGTTAGACGTTATCCGGGTTCAAATCC 494555 29 100.0 32 ............................. CTGTTATCATTGTTATTATCACTGATTTTATT 494616 29 100.0 32 ............................. CGATCAAGATGGATAAGCGCCTCTTCGCGGGT 494677 29 96.6 32 ...........................T. CCGAAATTGCTCAGAAAGTTTCCACCGCAGTA 494738 29 100.0 32 ............................. GCCACGACGCCTGACCCCATCGGGACAGACTT 494799 29 96.6 32 ..........T.................. CGACCTGTTCCGGAAATACCGCGCCCGCCGTG 494860 29 100.0 32 ............................. CGACGCTTCCATCGTCTGACAGGCCTGCTCGT 494921 29 100.0 32 ............................. TTGCTCATTGGGCTCCCCCCTCAAACAAAACC 494982 29 100.0 32 ............................. TTGTAGCCTTTCCAGTTGAGTTTGCATTGTTC 495043 29 100.0 32 ............................. TAATGCTGGCCACGACAGCGCAGCAGATTACA 495104 29 96.6 32 .........T................... CAGTGAAACGCGCTGTCGCGTATGTTGGGTTC 495165 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 495226 29 100.0 32 ............................. ATACTGCGCGTTTCTGTAGCGCCGTAATTCAG 495287 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCGTACAGAGAGATATGAGACACTATGCTTAACGGGGATAAGATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTTCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCGGGGGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112918-112094 **** Predicted by CRISPRDetect 2.4 *** >NZ_DACWUI010000011.1 Salmonella enterica subsp. salamae strain CCUG30039 SAMEA7114072-rid11198973.denovo.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112917 29 100.0 32 ............................. TTGTTCATTGTTTGCTCCATAGCCCCGGCGAA 112856 29 100.0 32 ............................. CCTGAAATCGCAGCAAAACGCAGCGATACTGT 112795 29 100.0 32 ............................. CACTTCATGAACCGCGATACAGCGATTCACCG 112734 29 100.0 32 ............................. CGTTTTGCCGCTCTGCCACTGACCCGGTCGCC 112673 29 100.0 32 ............................. CGCACAGTGTCAGTAAGGAAGCGTGGGAAGTC 112612 29 100.0 32 ............................. TGACAATTTCAACGGGTAGCACGGTTGATCTG 112551 29 100.0 32 ............................. TTCGCGAGCCAGTGAGTAATCGTGAAATCGAG 112490 29 100.0 32 ............................. CGTTTTAAAAACATTTGTTAACTTTTAATATT 112429 29 100.0 32 ............................. CGGCTGCCAATATCCGGCAGGCACGCGCTATG 112368 29 100.0 32 ............................. TCGCCGTCTGCATTGATCGCAGCTTTAGCGAG 112307 29 100.0 32 ............................. TGGCAGGCGTTTGAGAGCATCTACCCGTCGCT 112246 29 96.6 33 ............................A GCGCGTCTAAAAAATGCGCCGTATTCACCTCCT 112184 29 100.0 33 ............................. ATGCCAAGCTCGTTCGCCTTGCTTGATGACCAC 112122 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCCCTTGAAAATCAATGAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGCAGTAAAAAATCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130008-129065 **** Predicted by CRISPRDetect 2.4 *** >NZ_DACWUI010000011.1 Salmonella enterica subsp. salamae strain CCUG30039 SAMEA7114072-rid11198973.denovo.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130007 29 100.0 32 ............................. GGTCGGATCAGCTGCGGCGGATAGTCCATTCA 129946 29 100.0 32 ............................. ATTAGCGGCGTTTAACGTCATCAGGTTTTCAA 129885 29 100.0 32 ............................. AGAACTGACTGTAGGTAGCATTGTTATTGTTC 129824 29 100.0 32 ............................. GGACGTCTTTTTATTTCATCTCCTTTTCTCGC 129763 29 100.0 32 ............................. GTTTAGGGGGAACAAATCCGGGGTGAGGAATA 129702 29 96.6 32 ............................T AGATGGCCGCAAGACTCAGACGCGGCGGATCA 129641 29 100.0 32 ............................. AGTATGCAAAGTTGATTCTGTCGAATAGCGGG 129580 29 100.0 32 ............................. TTTGCGCGTGAACGTGGCTCTTGCGGTCGAGA 129519 29 93.1 32 ...........................TA CTTTTTCGCCGGTTAACGGTTCAAAATCCTGC 129458 29 100.0 32 ............................. AGATTATCTACCAGGTCGCTGGGGGCCGGTGC 129397 29 100.0 32 ............................. TAAACCCCTGTTTATAATCTTTGCTCACCTTT 129336 29 100.0 32 ............................. AAAATACAGTGTGGGAAAAAAGTAAAAACAAT 129275 29 100.0 32 ............................. AAATCGAGACCGATAGGCTGGCGGCGCACCCG 129214 29 100.0 32 ............................. ATGGCTATTTCTCAAAACTTTAAAACGCAGGT 129153 29 100.0 32 ............................. GGGGCAGGGAGCCGCCTCAGTTGTACCAGGAA 129092 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTTTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //