Array 1 63492-63280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKN010000037.1 Escherichia coli strain PJXMCRW720 W7_FDSW210082175-1r_1.clean_(paired)_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63491 29 100.0 32 ............................. TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 63430 29 100.0 32 ............................. TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 63369 29 100.0 32 ............................. CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 63308 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGCAGGTCGACCGACTGGAGGCGGAGATTGTCG # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43953-45445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKN010000005.1 Escherichia coli strain PJXMCRW720 W7_FDSW210082175-1r_1.clean_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43953 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 44014 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 44075 29 100.0 32 ............................. TTTTCGGGGCCATAAATGGCGCTCATTTATGT 44136 29 100.0 32 ............................. GATACTTTATTAGCGAAAGTAATCCTAGCTCT 44197 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 44258 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 44319 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 44380 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 44441 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 44502 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 44563 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 44624 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 44685 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 44746 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 44807 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 44868 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 44929 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 44990 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 45051 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 45112 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 45173 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 45234 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 45295 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 45356 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 45417 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 614-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKN010000083.1 Escherichia coli strain PJXMCRW720 W7_FDSW210082175-1r_1.clean_(paired)_contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 613 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 552 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 491 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 430 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 369 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 308 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 247 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 186 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 125 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 64 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GCAGGTCGCTCGACGCGGCACGCAGTCGGGCACAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //