Array 1 7949-7494 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKX01000015.1 Salmonella enterica strain TUM12213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7948 29 100.0 32 ............................. ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT 7887 29 100.0 32 ............................. TGCCCTTTCCGCCGACTCACCGACGCGCCCGG 7826 29 100.0 32 ............................. GAGTTTATTTCCCATCCCTAACAGCCGGTTAA 7765 29 100.0 32 ............................. GCTTACGAAGTTCTTTACCTGTACTTGGCGCA 7704 29 100.0 32 ............................. ACGTGGCGCGGGATCATACCGTGGGATAAAAC 7643 29 100.0 32 ............................. CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA 7582 29 100.0 32 ............................. CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA 7521 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGAGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGTATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 393-543 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKX01000070.1 Salmonella enterica strain TUM12213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 393 29 79.3 32 .T..CCAT..T.................. CCGGCCGGTCGAACATCCACAGCAAATTGACC 454 29 100.0 32 ............................. GTAGTGCCTGTGCATCCCCGAATTATGGTGGC 515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GACCTATCCCCGCCCGCAGGGATTAACCT # Left flank : ATTTGTTACGATAAGTATTTTTTATGTTACGAAGATTGGCTTTACGGTATGTTGTTACGATAAAAAGGGATGTGTATCATTTGTGAACTTGTTACGAAAATTATTCGCTGTGGCTTTAAGTGATAATATGGAGGGGGGGGGATAATACCAACAATTTCATTGCTATAAATTGTTACGATAATGGGGGTGGTTAATCAACATGGAATCAATTAGTAAAAACACATAAAAAACTTCATAGTTACGGAAAAATCACCAAGCGTCTAAAATAATGAAGCAGTAAATTAAAATCAATTAAATCATGTAGTTAAATTAAATACATTAAACAATGGATTTATTGCAAGTTAAAATTTAAGTTTCCGCGGCCCTACGTGCCGCAGCTTAACGATGATTTAG # Right flank : TCTGGCGGCATCTGGCTGAAATCTATAGCGAAAAATAACGCCTGAATTTCTACCAGATTTTTGCGGAAATTTCCTCGTTCAACCACAGCACACTGGCTATGTCCGGAGGCGTTAATTCGGGCGGGCCGCGCCCTATTTTTATTCGTTACACTGCCCTGGCAGCAATATTCACTGCGGCATTAATGTCACGGTGATGTTCTGCGCCGCACGCCGGGCACTGCCACCGGCGGTCTACCAGTGTCAAATGTTCATTAATCTCGCCACAGCTGCTGCAGCGCTTGCTGGACGGCTCCCAGCGGCCAACTTTCAACAACGCGACGCCGCGCCATGCACATTTGTACTCAAGTTGCCGGAAAAACTCACCCAGGCTGGCGCTGGCCAGCGAACGGTTCAGCCCGCGCTTGCGGCTGGCGCCGTTCGGCAGGAACGCACCGGGGTTATCCGGGTCTGGCTTCGGTTTTGGCGCTGCCATCATTCCCCGCACATTCAGATCTTCCACT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCTATCCCCGCCCGCAGGGATTAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTGCGCCCGCAGGGATGAACCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //