Array 1 28507-35845 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVM01000005.1 Xanthomonas translucens strain CS4 flattened_line_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 28507 31 100.0 34 ............................... TCCACACGTTCAACCCTGTAGTGCGAGACGTTGC 28572 31 100.0 34 ............................... TTGCGCGTGTTGCAGTCAATGCGCCACTGGATGC 28637 31 100.0 35 ............................... TGGCGATGCTGCCCGACCGCGGCAAGACAACTTTC 28703 31 100.0 38 ............................... CTGCATGGCGTCGAAGTGCTCAATATCGACGACGGCAC 28772 31 100.0 34 ............................... AACGACTTTCAATTTGCCGGACATGCGCGGCGAG 28837 31 100.0 33 ............................... TGTAGTAAAGGCGGTGGTGTGGCTCGGCGAGTC 28901 31 100.0 34 ............................... CGGATGCACCTGGTCAACGATTACGTCACGGAAA 28966 31 100.0 34 ............................... AACAATGACCCGGCGCTAAAGGCGCTGCACGTGG 29031 31 100.0 36 ............................... TGGTTCCTCTGTGCGGGTACGAATATCCTACTTACT 29098 31 100.0 33 ............................... GGGTTGGAGACGTGGCCGGGACTATTAACAGTG 29162 31 100.0 34 ............................... GAGTACAGTGGCAATAATATCCGCATCTACGATG 29227 31 100.0 35 ............................... TCCCTCACACTGTAAGAGATGGGAATCGAACCCGG 29293 31 100.0 33 ............................... AACGGTTGGCTTTTCTTTCGTCCACGCCACCGG 29357 31 100.0 34 ............................... TGCTTTTATCGCGAGCGCAACGGCGAACGAAGGG 29422 31 100.0 34 ............................... TTCAGACCTTCGGCAACCGGCGCCGCCGCGTTGG 29487 31 100.0 34 ............................... CCAGAAGTCCGCGCCTGCCCACCGGTCGGAGCGC 29552 31 100.0 37 ............................... CCGTCTATACGCTGTTCGGCGAGGCGTGGGACGGTCA 29620 31 100.0 34 ............................... TCCGTGCAGCGCCGGGAAAGCGGATTTGATGATT 29685 31 100.0 35 ............................... AGCTACTGCCGCCTGCAGCTGCGCCCTGCCGGACA 29751 31 100.0 34 ............................... CGAGTTCCATGACGGCCAGCACAGAGGCAATCCT 29816 31 100.0 36 ............................... CTCTAGCTCTGCCTCTCGCCGGGCGCATTCCACCCG 29883 31 100.0 35 ............................... CTTGCGGTCGCCCTGGAACTCCACCACTTGCTTGC 29949 31 100.0 37 ............................... TCCTAGTTGCTAAACGTATGTTGCCGGTTTATTTGGG 30017 31 100.0 34 ............................... CCCCTGCCTGCCAAATACTAGGAGCTGGCCGTGC 30082 31 100.0 34 ............................... CCGTGAGAGGCTCAGTTTGCGCTGCGGCAGCGAA 30147 31 100.0 34 ............................... CCTTGGCGTAGGCGGCACATGGCAGGCTGGCGAA 30212 31 100.0 34 ............................... CTACCCGAGCATTATGGAGAGCCAGACATCGAGC 30277 31 100.0 35 ............................... GCCTGCAGATCGCCCGAAGCGGCCAGCAGGGTGTC 30343 31 100.0 34 ............................... CAAACCGGCCTTCAGGAGTCCCTTAAGGCCGCCG 30408 31 100.0 36 ............................... TTGCAACTGATGCCCTGCCCTCGACTCCGTAGGGGC 30475 31 100.0 34 ............................... GGCTTTGGCGGCTCCGGGCCTGTGATCTTCGCGC 30540 31 100.0 34 ............................... GCAAGAACGGCGACTTCACCCTCACGATGTTGAC 30605 31 100.0 35 ............................... TCTTTGAGGCTGTCGCCCAGCGCGGCCACTGATGC 30671 31 100.0 35 ............................... ATCGCGATCATGTTGATAGGCACCGGATGGTCTAC 30737 31 100.0 34 ............................... ATCATGCAGCAGGTCCCATTCATCCCGCAGCACG 30802 31 100.0 35 ............................... TTACAACATGGACGGCGTGCCGACCAACACTGGGA 30868 31 100.0 35 ............................... ATGGTGAAAGCGCCGTCGTGGTACGCGTCGCGGAA 30934 31 100.0 35 ............................... AAGGGTCTTGCATGTCCCCGTCCCCCCGGCTCCCC 31000 31 100.0 35 ............................... CACAAAGACCCGGAGAGCAGCGCTTATTGCCACCG 31066 31 100.0 33 ............................... GGTTGGCGGCGGCGTGCGATTCTACAATTGGGG 31130 31 100.0 35 ............................... AGTTCCTGATGCAGAATCCTCTGTGTGTGTACTGT 31196 31 100.0 35 ............................... ATGTAGTGCGCGATGACCTTGGCGCTGGTGTTAAC 31262 31 100.0 35 ............................... TCTCTCACAGTGCGAGAGATGGGAATCGAACCCGG 31328 31 100.0 34 ............................... TTGCGCATGCCGTCCTCGCCGAAGTGCTGCGTGA 31393 31 100.0 35 ............................... TGTGGGTGCCGGCCGCAGGTCTATCGCCAAGCGGG 31459 31 100.0 36 ............................... CGCAGCTACCTGATGCGTAACGAAGGCGGCTGGGTT 31526 31 100.0 36 ............................... GGAGATTTCTCCGGTGTGATCCGCAATCAGGTGACC 31593 31 100.0 35 ............................... AGCCAGTGCGGCCGCAGCAGCGCAGTATTGCGGGA 31659 31 100.0 36 ............................... GCAGGCGCTGCTAATTCGCTTGTGCAGACGTTCGTT 31726 31 100.0 35 ............................... TTCGTCGTGCTGACCCAGCGCGATCCTGCCAGGCT 31792 31 100.0 34 ............................... TCTCTCACAGTGCGAGAGATGGGAATCGAACCCG 31857 31 100.0 35 ............................... AAGTTGTAAAGTCCATAGAGGGTGCTAACCAGCCG 31923 31 100.0 35 ............................... ATTATTTGCACCAGGTCTGCAACCAAACCGCGATC 31989 31 100.0 34 ............................... CTCCCAGCGAAGGAAAGCGTGGACGGCGCGAAAG 32054 31 100.0 34 ............................... GTTTCCAGTTGTCCAGGAGCCTGACTGTCGTTGA 32119 31 100.0 34 ............................... TTCTCTCCTCGACTTCCATTCGTACAGCACAGAG 32184 31 100.0 34 ............................... TACATGGGCCTCTTCGCCCTCCTGGCGTTCTTCC 32249 31 100.0 35 ............................... TGAATGGTAACGGCACCGGCCAAAACCTGCTGGGT 32315 31 100.0 34 ............................... TCCACCTTCCCGAGGACCGCGTTGCAGGATCTAT 32380 31 100.0 34 ............................... ATCCTTGATCCCGTCGATAACCTGTCCGAGGTTA 32445 31 100.0 35 ............................... AAAGAGGACCTACAGCTGTACCGCAACATTAGGGA 32511 31 100.0 36 ............................... TTGGCCGACGAGTTCGCCAACGCTGAACGAGGCGGG 32578 31 100.0 36 ............................... ACCCTGACGCCGTGGCTGGTCCGGATCGAGCAAGGT 32645 31 100.0 37 ............................... ACGTGCACGGTGTAATCGGCGAGGACTGGAGCTGGGG 32713 31 100.0 35 ............................... CTGTTCGCAGCTGCGCTTGACGCCCTCCCCGAAGT 32779 31 100.0 34 ............................... GCCGCACCCAGCGAGGCAACGGCAAGTACAGCGA 32844 31 100.0 35 ............................... TCATGATCCACAACACTTGGCTGACGTACTCGGGT 32910 31 100.0 35 ............................... AGACCACGCGCTTGCCGGGCTACCTGGCCCTTCCC 32976 31 100.0 34 ............................... CCTACCGGCCGGGTAAATCGCCCGTAGAGCAGCG 33041 31 100.0 36 ............................... ATTAACCCGCTCACCGTGGGCGCTGCGGCAATTGCA 33108 31 100.0 35 ............................... GGTCGCTGCGCAGGCTAGGCAGGCGCGACATGACT 33174 31 100.0 36 ............................... GCGAACTGCTCGAAGTGCCGACGGAAGGCGATATCC 33241 31 100.0 35 ............................... AAGTATCGTCACGAACCAGCTGCGTGCTTGTAGGT 33307 31 100.0 35 ............................... CAGGCATGGGCCTGACGCAGGTAACCCGCGCCGAG 33373 31 100.0 34 ............................... GCGATCCAGACCCCGCGAATCGCGGTCTGGCTCA 33438 31 100.0 35 ............................... TTGCTGTCGGCGGGGTTACTCCTCACCCGTAGCGC 33504 31 100.0 34 ............................... GGCGAAGATCGCGGGGGGTAAATTTCGGGATGCC 33569 31 100.0 35 ............................... AGTCAGTGCATTCCGGATTTCGTTTTGAATCGCGT 33635 31 100.0 34 ............................... TTTTGCATGAGCCGCGGCATGTAGTCCGCGGACG 33700 31 100.0 36 ............................... AACGCAGCCGGCATCAAGGCTGCGCACCTGGACGGC 33767 31 100.0 36 ............................... CCGCATCGCCAGGCTACCGAATCGCGAGCACAAGCC 33834 31 100.0 35 ............................... TCTTAATTGTTAAGTTAATTTTTGAGGCGGGGCGA 33900 31 100.0 34 ............................... CGGTGTGCTGGCGCTGGCGTCACACACCGGATGG 33965 31 100.0 34 ............................... CTACGGCCTTCGCACGGCCGCGTGGTCGAAGTGC 34030 31 100.0 36 ............................... TTTTCCCAAATCGGCTGGATTCCAAGCGATTTCGGG 34097 31 100.0 35 ............................... TACTGCGCGGCGATCCCTGTGAAAACGGGCGGGTC 34163 31 100.0 35 ............................... CCGTCCAGGTGCGCAGCTTTAATGCCGGCCGAGCT 34229 31 100.0 36 ............................... ATGACCGCGTGGATCGCGCGTTTGCTTGGAGCGACT 34296 31 100.0 34 ............................... TTGCACGACCCAACCGGCAACACGCGCTGGTGGA 34361 31 100.0 36 ............................... AGGATCGAACGGGCGGGGAGGCATCCCCAGGATGCC 34428 31 100.0 36 ............................... CTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGAGC 34495 31 100.0 34 ............................... TTTTTGTCCGGATACCAGTTGCGCGGACTGCAAG 34560 31 100.0 35 ............................... GTGGACACCCTGCAACGGACGCGGGGCCGCAGGCT 34626 31 100.0 35 ............................... ATGGGAAGGCGATGGAATCCTACCCGGCCATGGTC 34692 31 100.0 34 ............................... TTGACCATGCCGCGAAGCATGGCCTGATCCAGCC 34757 31 100.0 35 ............................... TACAGCGCCCAGCGGCTGGCCAAGCTGCAGCGCGC 34823 31 100.0 36 ............................... GCCTATGCCGTCGTTGCTGGATGGTCAGTGCAGGCC 34890 31 100.0 35 ............................... TTCTACAACCTGTTCCTGATGCTGGAATCGCTCGG 34956 31 100.0 35 ............................... TTTCTCGGCGGCGATCACTGCCTGGCTAAACTTCG 35022 31 100.0 36 ............................... GGGAAACTCGTCAGCGGGCCGAGTACCCCGCCGCCG 35089 31 100.0 35 ............................... TCTGCACTGGCGTCGATCCAGGCGCGGACCTCATC 35155 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 35221 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 35288 31 100.0 34 ............................... AATGGCCGCCAAGCCGAAGTAGGTACCATCTGTC 35353 31 100.0 35 ............................... CAGTCCGCCATTTCGGCCACAAGCTGCGGTGCGGC 35419 31 100.0 36 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTG 35486 31 96.8 35 ..A............................ AGAAATATGTCGGAAGTGTCCATTGACGCGGTTGC 35552 31 100.0 34 ............................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGACCC 35617 31 100.0 35 ............................... TTTGGCGTCAGGTTGAGCACGAACTTGTCTGGGTC 35683 31 100.0 34 ............................... TGGTGCGACTCTATCAGCTGCCCCACTCATCAGG 35748 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 35814 31 87.1 0 ......CG.......C.........G..... | C [35839] ========== ====== ====== ====== =============================== ====================================== ================== 112 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTCCCTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCGCCGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAACCCTTGGCGTTGGTGAACGAGACATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGATCGCGGTGTTGGTGGAGGACCCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGGTCAGCGGCGCCACCGTCTTGTCGGCGCCGGCGGTGTTGCCCACGGTCACCGAGGCGACCGTGACCGCGCCGGCATTGGCCGCGGCGGGCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //