Array 1 350497-351364 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 350497 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 350557 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 350617 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 350677 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 350737 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 350797 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 350857 28 100.0 32 ............................ TTGATGGGTTTGTACTCAGGCCCGGAAAACTC 350917 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 350977 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 351037 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 351097 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 351157 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 351217 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 351277 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 351337 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGCGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1871797-1872305 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1871797 28 100.0 32 ............................ ACATCCGATTCACCGGATACAGCTGGTTTTCA 1871857 28 100.0 32 ............................ TGAGTTCTGAGACGATCGGCCTCGGCGATCCC 1871917 28 100.0 33 ............................ ATGTCGTGGTGCTCCTTGGAGCAGGGGCGCCAA 1871978 28 100.0 32 ............................ TCGATCAGACGACCGTAGGTGCGCAGGCCTTC 1872038 28 100.0 32 ............................ ACTACCGACAACGCCAGGGCGTAAAGCTGCGG 1872098 28 100.0 32 ............................ AACTGGTGTTCTTCGGGAACCAAGTCGGCAAC 1872158 28 100.0 32 ............................ AATGCCGAACCGCTGCAGCCAGGTATCGGGCC 1872218 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 1872278 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1881159-1880830 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1881158 28 96.4 32 A........................... ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 1881098 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 1881038 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 1880978 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 1880917 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 1880857 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGCGTAGCGCCACGCGGCGAGCATCGACACGCCGCCGTCGAAGACGGTGGACGTAGTAGCAAGACCGCGCCACATCGAAAGCTGAACAGACCACTTCCACCGACTCCTGCTCACTCAACTGGTCTATCAGCGCGTACGATCGAGTTCGTCCGACATCAAGAGAGCGGTAGCCTTTTTTAATAACGCTTTCTCCCGCTCCAACCGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAGAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTCTCGCCTAAATTGGTGTCCGGGATCAGTAGACCACTAC # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1883298-1882430 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1883297 28 100.0 32 ............................ ATGGCTTGCTTGAGCTGATAGGTCAGCGACCC 1883237 28 100.0 32 ............................ ATAACGCCTATCGCAACCTCGCTGGTGTCGAT 1883177 28 100.0 32 ............................ GAACACAGGGGCGCCCCATCCGGCGCAATCGA 1883117 28 100.0 32 ............................ ACGGTCTGCCCGAGTCGATGATGAAGGGAATT 1883057 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACGAA 1882997 28 100.0 32 ............................ AGATAGCGGGCGCTTCGTCATTGGCTCCGTTG 1882937 28 100.0 32 ............................ ATCACCCTGTCGATCAGGTCGATCATCCCATC 1882877 28 100.0 32 ............................ GGCTGGTGTGCCCCATAGCTGCCAGCCAAGGT 1882817 28 100.0 32 ............................ GCGCAGGCCCGATGCCTCGAAGCGCTGCACCG 1882757 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 1882697 28 100.0 32 ............................ TTGAAGGTCGCCTTGATGCCTTCTTTGATCGC 1882637 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 1882577 28 100.0 32 ............................ AGCTAGAGAGCTAAATCCTGCGTGGAACAGGA 1882517 28 100.0 32 ............................ ACGTCGAGGGGAAGTGGGATACGCCTACGATC 1882457 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TGGGCGATCGAGCACGGCATCACGCGCGAGACGTTCTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACTGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCCGTTGGGCCTCCTGCGCCGTCAGGTAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGTTGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGTGGCCTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCGTTGATCACCAGTTCGGCATCCGGCTTGGCCGAGAACGCCCAGCCGATCACCCGCCGAGTATGCAGATCCAGCACCGCGGCCAGGTAGTGCCAACGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3180933-3179989 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3180932 29 96.6 32 ...........G................. ACAACGCAGATCGGCGGCCACATCTTTTTCAA 3180871 29 100.0 32 ............................. AACGTGGACGGCCTGCGCGCTCGCTACGCCAT 3180810 29 100.0 32 ............................. CACCTCGGCCATGTGCATGTCGCCAATGACCC 3180749 29 100.0 32 ............................. TCCTTGACCTCGCCATGGACCCAGCCGTTGGC 3180688 29 100.0 32 ............................. GACCGAGTCGCCCCAGCCGAACTGGTTACCGG 3180627 29 100.0 32 ............................. AGCGCTTGTGCCGAGCGCTGGGAAATGAGCCC 3180566 29 100.0 32 ............................. CAAAGAGTCTAGTTAGTAACGCCGAGGCCCTG 3180505 29 100.0 32 ............................. GATGGCAACCGGCGTTTGTCCGCGCTGAACTG 3180444 29 96.6 32 ............................A GCCGCTGAGCAGCACCTACCGGCACCTGAAGA 3180383 29 100.0 32 ............................. TCACGATCACTGCTGAGAACCCCAACCACACC 3180322 29 100.0 32 ............................. CATCTGGCCGGGGCTCGGGTCTGGTTCTACGA 3180261 29 100.0 32 ............................. TAGTAGGAGGGGCTAAACCCAACTGGTCAGGT 3180200 29 100.0 32 ............................. CATCCTCAGCCAATCCCCACCGGCTGCCCGCA 3180139 29 100.0 32 ............................. AGGCCCGCATCCGCGAGCTGATCGCCGCCGGC 3180078 29 100.0 32 ............................. CTAGCCATGGCTGAGGACGCAGCAGCAAAGGG 3180017 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCCACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3191132-3190493 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3191131 29 100.0 32 ............................. GCGTAGTCGGCGGAGTACTGCGAACTCGACCA 3191070 29 100.0 32 ............................. CGCGCCTGATGCCTCGCGCGGCAGTGCGTGAC 3191009 29 100.0 32 ............................. CTGGTCTGCAGCACCAGTTCGGCACGGTGGCA 3190948 29 100.0 32 ............................. CGGCCAATCACCGTTGTCATTGAAGGCGGAGC 3190887 29 100.0 32 ............................. CCGAGCAGCAATGCCGCGACGGCGAGATCGTA 3190826 29 100.0 32 ............................. ACCAACGCCCAGCGCCAGCGGGAGAAGCGCCA 3190765 29 100.0 32 ............................. CGCAGCGTCTGGACCGTGCCCACAGCCGGTTT 3190704 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 3190643 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 3190582 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 3190521 28 79.3 0 A..........A..C.....-..A....T | C [3190512] ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTAGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //