Array 1 1341693-1341906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1341693 30 100.0 32 .............................. GACATTTCGCAACTCCTCAGTGTGATGGTGCG 1341755 30 90.0 31 ........T.............C......C TGCTGGCCGCCACGACGCTGGCCGGAGCCAG 1341816 30 100.0 31 .............................. CGATCTCAGCGGCCTCACGCGCGCCCATCAC 1341877 30 90.0 0 ...........................TGT | ========== ====== ====== ====== ============================== ================================ ================== 4 30 95.0 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGCCACACCAGCGTGGACCCGCACCACGTGGTCGCCCACGGGTCAGGCGCCGAGTTCACCGTTGGTGTGGCGGTGCCGGGCCTGTGCCGGGCCTGGTTCGACGCGGACGACGACTCGGGGGAGAGCACGCTGTGGCTGTACGACACCGCGGGCTCGTGGGCGTCGGTGGACTACGTGCCAGGTGCCGGGGCATACGCGGTTGAGCAGGCTGGCCCCCGCAGTTTGTGGGCGGAGGTTGAGTCCGCCTGGAGGTGGTGGGAGACGCACGGGCGCCCTGACCGGAGCCTGTTCGAGGTCACTGTGGGTACTGAAGGCCAGCGAGTACGTCTCGCCCCTTCGGGTGACCGGACACAACCCACCGACCTTCCGAGCGGCCCATGACCGATCACCCAACCGTTACGGCCACGGTTCCGAGGGCTATGCACTTCGTCCTTTTTGTCTCTTTTTTAAGAAGTTGGGAAAACGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCTTTGGC # Right flank : TTGACGCCATCCAGCCAGGGTGTGCGGCACCCCGGTGAAGCGCGGCCTGGTCACCCGTCCTTCCGTCACCGAGGGTGGAGAGCGTTCCTGAGACGCACCCACACCCTTCGGAAGTAGGCCATGAGCACCACGTTCTTCGACGAGGACCTGCTGAGGACCATCGCCGCCGAGCCGCACCGCCCGCTGATGTTCGTCAACGCCGCCGTGTACACGTTCGACCCGCTGATCGGCGACCTGACCGGTGCCGACCTCCTCCTGGACGGGAAGGAGATAGCCGGGGTCGGCACCGGCCTGCACACGGCCGCCGAGGACGACGGCGCGGTCGTCGTGGACTGCTCGGGGCTGACCGTCGTCCCGGGCGTGGTCGAGAACGACACCGTCGCCGGACTGCGCAGGAGCCCCTCCGACAGGGTCGGCACGCTGGCACCCGGGAACCCGGCGACCTTCGTCGTGCTCTCCGGGCACCGTCCCGGGACCACCGCTCTGGAGCAGGTGATCTG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2405752-2406830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2405752 30 100.0 31 .............................. ACTGGTCGTTCATGCTGGGCGAGATCGCGCT 2405813 30 93.3 31 ............................GG ACCGGGGTCACTCCTCGCCCAGGTCCGCCAG 2405874 30 96.7 31 .............................A GGGCGCGCAGCCGCTGCTCGTCGCGGCGCAG 2405935 30 96.7 31 .............................A CGTCGGCGGCGGGCGTGGCCGCCCCGCCGCG 2405996 30 100.0 43 .............................. CCGACATCCTCGCCGGGCTGGTCGCCTCACGCGACGCCGAGGG 2406069 30 100.0 31 .............................. GACGCGGGGAAGAGCTTCTGCGCGAACATCC 2406130 30 96.7 31 .............................A GGCCGCGTGGATCAGGCAGAACGCCTGGAGG 2406191 30 96.7 31 .............................G AAAGATAGTTTCTGACCTGCACATGTGATGT 2406252 30 96.7 31 .............................T GCGCGTTCTGTTTGATGTTGGTGAGCAGGGG 2406313 30 100.0 31 .............................. CCTCCCTCGCCCGGGCCGCCCCCACCCTCCA 2406374 30 96.7 31 .............................A CGTCATGGTGCACGACACCACACCCCGCCGC 2406435 30 96.7 31 .............................G AGGAGGAGGAGCGTCGCCTGGCCGAGCAGGC 2406496 30 100.0 31 .............................. GTTGACATCCACCAGCAGCAGAGCGCCGACG 2406557 30 100.0 31 .............................. GGTCCGGCGTGCTCTGTCGGGCATCGGCACT 2406618 30 100.0 31 .............................. GGGCCGCCAAGCTCCTGGGCACCCGGGGCGT 2406679 30 96.7 31 .............................G CGGGCGGTTTGTGGACCCAGCTCCAGTCGGA 2406740 30 96.7 31 .............................G GCGTGCCCCTGGTGGTCGGGGCCGAGGTAGG 2406801 30 90.0 0 ........................C...GG | ========== ====== ====== ====== ============================== =========================================== ================== 18 30 97.4 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CGAGCCCGACCGGGTCGAGGACGTGGAGGCCTACCTCAGGGACTACGCGCGTCGGCAGCTCACGGTGGTGCTCACGCCGCGGCTGATGCGGTTGAGGCGGATGGTGATCGGCGAGGTCGCGCGGTTCCCCGAGCTGGCGCGGGTGCTGTACGAGTGCGGGCCGCAGCGGGCGATCGAAGGGCTGGCGGAGAGCTTCGCCCGGCTGGGGGAGAGGGGGCTGTTGGCGGTGGAGGAGCCGCTGCGGGCGGCGTCCCACTTCAATTGGCTGGTGATGTCGGAACCGGTGAACCGGGCGATGCTGTTGGGGGACGAGGCCATTCCGACGGAGGCGGAACTGTGCCAGCATGCGGAGGAGGGTGTGCGTGTGTTTCTCGCTGCTTATGGGGTCGGCGGTCGTTAGGGGAGTAGTGGGTCTTATGGGGTTTATGGGTCCGGTGTCTGTTTTTCGAGAAGTTGGAAAATCGGCTGCTTGCCGCTGGTAAGTTTGCAGGTCGCTGACT # Right flank : GGCCGACCCCAGGCCCACCGAGTGCAGCGTCAGGCGCTCTCCTCGCTCAGGGTGCCGCCGAAGCTCCTGCGTCGTTCCGCGTAGGTGTTGACGGCGCGCACCAGGTGGGGGCGGTCGAAGTCGGGCCAGAGGGCGTCCTCGAAGACGAGTTCGGCGTAGGCGGTGTGCCAGGGCAGGAAGTTGCTCGTGCGCTGCTCGCCGGCGGTCCTGATCAGGAGGTCCACGTCGGGCAGGGAGGGATCGTAGAGGTACCCGGCGAGGTCGGACTCCGTCATGCGCGTCGGGTCCAGCCGCCCCGAGAGCGCCTCGGCCGCCGCGTGTTTGACCGTGTCCACCATCTCCTGGCGGCCTCCGTAGTCCAGGCAGAACGTGAACGTCACCCCGCTGTTGCCCGACGTCAGCTCCTCGGCCCACTCCAGCCGTTCGCGGAGCGCCGCCTCGATCCTGGTGCGGCGGCCGTACCAGCGCATCCGGACGCCCCGGGCGTGCAGGCGCCCGGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2427443-2427715 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2427443 29 69.0 33 TG.T......G...GAG.........G.T CTGTAGGTTTGGTCTCCTGGAGCTACAGCTTTT 2427505 29 82.8 32 TG.TAG....................... CATCGGTTCAACCACCCCTCCTCCTCCCGCGA 2427566 29 100.0 32 ............................. CGCTCGGTGAGCTGCTCGATCGTGTCGAGGAG 2427627 29 100.0 31 ............................. CCCGCCTCCTCGAACGCCGCAGCCACATCCT 2427687 29 86.2 0 ..............T...........ATT | ========== ====== ====== ====== ============================= ================================= ================== 5 29 87.6 32 GTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : TCCACCCCGGCCTGGTTGGCGTCGGCGTACAGGCGGGCCCGATCCTGGCCGTAGCGGTCGACCAGCCCCGCGTAGACCAGCCCGTGCTGGGAGGTGACCTTGCCGGTGGTGTGCCCCGTCGTGCCCTGTCCCAGGCGCCCCGCCTCCAGCACCGCGACGCTGCCCGCACCGGCCCGCCGCGCCAGCAGCGCGGTGGTCAGTCCGACGATGCCGCCTCCCACCACCGCGATGTCGACCTCCACGTGCTGGTTCAGACGGGGAAACTCCGGCCGGTTCTCCACGACCGTCCACACGCTCCTGTGCTGCATTCTCTGCCCCTCCCGATCAGGTCCAGACGCCGTCGGCCCCCGTGCGACGGACAGCGCCTACACCAGCTACCCAGCGTTCCCGGTCGCTACCGCCGGAGTCCCTGGTCGGGGCATGGACCCGTGCCGCTTCCAGAGGCGGGGAGGGGTGTGCGACGAATCCGGGCTGGGTGAAAGGAGAGTGGTGGTGTGTGG # Right flank : TCGGCGGCCACGGAAAACCGCTCGACGGCTTCGCGGCGACCTGACACAGTGGCGCACCATGACGGGTTCCGAACTTGTGACCGCCGAGGACGTGCGGCTCATGCAGGGGCTGGCGCAGCGCGTCACCGCGATCCGCCCGGACCTGGTGAACAGCGACGCCTCGTTCGGCGAGCTGGCCTGGAACTGGGGCAGGGGGCACGCCAGCGACGGCGCGACCTGGCCGCGTCGGCTGTGGTTCTCCGGCGGGGAACCGGTGGCGTGGGGCTGGGTCCGCCTTCCGCGCCGGGTGAGACTGAGCGACGGCTCGGTCAGGGACGTCACCGGCGCCTACCTGATGCACCAGGTCCATCCCGACCACGCCGGGCTGGTCGACGAGGTGATCGCCTGGTACGACGCCACGGCGGAGGGCCTCGAACGCACGGTGCTGCCCAGCGCCGCCGACGGGTTCGCCCTGGAAAGGTGGGCGGCGCACGGCTACCGGACCGACCCCGAATCGCTCG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2780118-2780756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2780118 30 100.0 31 .............................. CTGTGACCATGCGGATGTGGGAGCAGACCGG 2780179 30 96.7 31 .............................C GCTGCTGTCCGACCCCGTGCTGCTGGCGTCC 2780240 30 96.7 31 .............................A TCGGCGCCGGTCTCGCCGGGGGTGTCGGCGG 2780301 30 93.3 31 C............................T CCCTGTACGAGCTGTTCGGCCCCAACCTGGA 2780362 30 93.3 31 C.......................A..... TCCTAGGCAAGGGTCGGTAACCATGTCTTTC 2780423 30 96.7 31 ........................A..... CTCCGCCCGCCCCGTGCTGGCTGAGGCCCCC 2780484 30 93.3 30 ........................A....C GGGGTGCCCACGGTGGCGTTGTTGGTCTCG 2780544 30 93.3 31 .................C......A..... GTTCGACGATTTCGGCGGAGTCGAAATGGAT 2780605 30 90.0 31 ......T..................G...C CCCCGTAGGCGGGGCCTTCGGCCAGAGCCTG 2780666 30 93.3 31 ......T......................T CCTACACCGTCGCCAGGTTGGCGGAGCTGTG 2780727 30 96.7 0 ....................C......... | ========== ====== ====== ====== ============================== =============================== ================== 11 30 94.8 31 GTGAGCCCCGCGCACGCGGGGATGGACCGG # Left flank : GGAACGGGGCTGCGGCCCTTCCGGGGTGAGCCCGGCCGGATCGTGTGGATGGGTGTTGGGCAGGCGTGGGCGTACGTGTGGCCGGACGGCACCGTCACCGGCGGCGGTGATCGTGCCTTGGGTGAGGAGTTGGGGCACGCCTATCGGTTGCTGCGGGACGCCGGGCTCCCGGGTCCGGAGAGCTTTGTCCTGGAAGCCGTCACCGGTCAGGATTCCTGCCGGGTGGTGTGTGCGGCCCTGGGACAGCACTGGGATCACCCCGTATCGCCCTGACTTTCTCGTCTTGCTCATCCTGCTCGTGCTGCTCTTCAGGGCTGTTTCTCCGGGCCGGGGGCCTGCGACCGCAGCCCAGGCATGGAACGCCTGTGTGCCCGGCGCGGTAGTGGGGATGAGCGCCGCCGTGCGCTGTGTGAGGATGTACGTCGAGGCCAAGAACGTTCAGCATGTCCAGGGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTTCCGCAGGTCGTTAAG # Right flank : GTCCTGGTCGGCACCGGGCTACAGCTGTGGGTGGGGGTGCACCTGACCGGAATCGACGCGCCCCGCCAGGCCCTGCTGGCCCCAGCCGCCGACCCGGCAGAGACCCCCGGCGTGTCCGGCCTGCCCGGTCGTGTGCGCGAGGCGCTGCGGGACCACCACCTGACTCTCCCTGACACTAGCGGTGAGCACGCCTCGGCCGCGGTGGACGCGATACTCCTGGACGGCGAGCCGGTCTGAATGGTCAAAGCGCGCCCGCTGACCTGACCCTACGCCCTACCGCGGCCCGCACTTCGGCGCTCGGGTGCGGGCCGCGGCGTGTTCAGCTGGTCGACCGCTCGGGCCGGGTCTGGTCCGGTTGTGCCCGGCGCATCTGCTCCAACAGCTCGCGGCTGCGCTCGTCCATGCGCGCGGTGGCCAGCAACCCGCCCTCGGCCTTCGCCGACGGCGCAGGGTCACGTCGCTGCTGGGCGTCCCGCTGGCCACGGCCGCGCCCCTGGCGC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCGG # Alternate repeat : TGAGCCCCGCGCACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2788453-2789518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2788453 29 100.0 32 ............................. TCGGCGGGCGCTGGCCCGACGGCCACGACCGC 2788514 29 100.0 32 ............................. TCGGCGGGCGCTGGCCCGACGGCCACGACCGC 2788575 29 100.0 32 ............................. CTTCATGCCTAGCCGCCTTCCTGGGGGTAACA 2788636 29 100.0 32 ............................. ATCCTGGCCCGCGACAAACACCGGTGCACGTG 2788697 29 100.0 32 ............................. CCGTCATCGCCATGTACCTCGCCCTGGGCGAC 2788758 29 100.0 32 ............................. AACGTCATCAAACCGGTGTGGGCGGGAATCAA 2788819 29 100.0 32 ............................. CACTGGGTTGGTGAACCACCAGTGGGCTTCAG 2788880 29 96.6 32 ............................T GCGCATGGCGTCCTCGGTGGTGAGGCGGTCGG 2788941 29 100.0 32 ............................. CGGTGGCCGACCTCGGCTTCGACAGCGGCGTA 2789002 29 100.0 32 ............................. GCCCTCAGGAGATCCCTGAGGGCCAAGAGGAC 2789063 29 100.0 32 ............................. GCCCGGAACGGTCGGTATCGGTCATCGCTATT 2789124 29 100.0 32 ............................. GGTGAACCAGGGGACGTCACCGGGGAGCGCTT 2789185 29 100.0 32 ............................. CTGTTCCATCCACGCCGCCCGCTCCGCGGTCG 2789246 29 100.0 32 ............................. CACACGCGCGCCCGGTAACAGTAGGGAATGCG 2789307 29 100.0 32 ............................. CCCCGCTCCCTCCACGAGATCGCCCCCCTGCC 2789368 29 100.0 32 ............................. GAGGACGAATACCGGGCCGTTTCGGAACAGGT 2789429 29 96.6 32 ..............T.............. CCGGTCAGCTCCGCGGGGGTCGCGTACTCGGT 2789490 29 89.7 0 ............T............G..C | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GTAGTCCAGTGCCCGCACGTCCTGCTCGTCACCCATCGGGGCCCTCTCTAGCGTCGGTGGATCATCCGTAGAGCGTAGAGGACCTCCTCCAACTCCCGCCGTGACCGAGGAGAGAGCACGGTCGAGTCGAGGATCTGCGACACGACCCCGACCAGTTCTCCGGCGGCCCGGGTGTTCAGCAGGGACGGCTTGCGGATGATGAGCGCCCACAGGGTGTGGCACACGACGTCGGCATAGGGGTTGATCGGGGTGAGGCGTCTGGTGAGGTGCTTGAGCAGCCGGTCGCCGGGCCAAGCATCCAAGTCGAGTCCAACCATGAACGTGTCCGCGAGCTGCGGGTCGCTGATCTCGCCGAGCCGGTACGCCCAGTAGTTCAGGTTCGCGATCTCGCAGGTGTCCGTGCGTTGTGTGAGGATGTACGTCTAGGTCAAGAGCGCTCAGCATGTCCTGAGTCAAGGTTGCGGAGAGATAACGGCCCGCGTTGTCGCAGGTCGTTAAGC # Right flank : CGTCTCGCGAAACTCCCGCCTGGTGGGGCGCGGTCTCGGTACGCTCACCGGGATGGTGACACTGAGACGCAAGGGGCCTGTGATGAGGGAGATCGAGACGAAGTACCGGGTGGCCGATCTCGAAGCGCTGCTGGCCGCGCTCAAACAGGCCGGGGTGCACATGAGCGACCCCGTCTACCAGGACGACCAGGCCTACGCCCCTGCTGGCTGGCGGCCGGAGCTGGGCAAGGTCGGCCACACCTTTGCCCGTGTGCGCACCCAGGACAGCGTGCACCTGCTGACCACCAAGACCCCGCTGGCCAACGCCATGGAGTGCGTGGAGTACGAGACCATCGTCGCTGACCGCGAGCAGATGCACGGCGCCCTGCTGGCGCTGGGCTACGAACCCACGGTGCGCATCGTCAAGCACCGTCGCACCGGCACCACAGGGCCCATCGGGGTGTGCGTGGACCTGGTCGAGGGCCTGGGCGCCTTCGTCGAACTGGAACTGGTGGTCGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 6 4050805-4050592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4050804 30 100.0 31 .............................. CGCCGCACCAGGGCCAGTGGCCGCCCATGTA 4050743 30 100.0 31 .............................. GGCTGTTGAACCCCTGCACGCGGATGATGTT 4050682 30 96.7 31 .............................T GGGCGCACCCGGTGGCAGAGCCGCCCGGATG 4050621 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGAGGACACCGGGTGCTGCGGGTGCGCAGCCCCGCGGTCCCCAACGCGCTGGCCGCGGTGCTTCTGTGCCTGCGCGACGAGACCGGGGCGGTGCCCCACTGCTACTTCGCCTGGTCGGAGGGGAAGCCGATCCGCCAGGTGCTCCGTTTCCTCGTGTACGGGGAGGGGGAGACCGCGGCGTTCACCCGGGAGGTCCTGCGCGTGGTGGAGCCGGATACGCGGCGTCGCCCCGTGGTCCACGTCAGCTGAACGGCGGGGCCCTCCCGCTCGGCGTTGTGTGAGGATTGGTCCAGGAAGGCAGGGGCCACGCGGGTGGGTGTTCCGAATTCCGCGCGTACGAAGGCGAACCGCTTGCCGGGGTGGCTGGAGTGAGTTCTCGAAGAGGCGGTTTTTGTTTTTGGTGGTTTTCGGGCGATTTCGGGGTTGGTGGTGCCTGTGTCTTTTTCTGAAGAAGTTGGAAAATCGGCTGCTTGTCGCTGATAAGTTCGCAGGTCGTTGAC # Right flank : CCAGGTTGCCGCCCTCAGCGACGACGGCACCCCCCAACGCCGCGCCGCGAGCTGTGCGCCGCGACGTTGAGGGGCGTGTGCTGACCGCTGCCGTCAGCTGTCCTGGCCGCCGACGGGGACGAAGTTGGCGTACTCCTCGATGCGCCTGATCCGGCCGGCGTCGTCGAAGCCGAAGTAGACCGCGGCGTGGACCTCGCCGCGCGTGCCGCTGGTGGTGGCAACGTGGATCACGTGCTGCTGGAGGACCTCGCCCGGCTGGGAGAGCTGGCGCAGGACGTCGTAGCGCATCGACTCGATGGAGTCCAACAGCCCTTCCATCCCGGCGATGTTCTCCTCGATGGACTGCTCGCCCTTGCCGTCGTTGTGCCAGACGGTGGCCGTCTCGGCGCACAGGCCCCGTGCGCTCTTCCAGTCGCGGTTCTCCAGCGCGCGGAGGTATGTGACGGCCCTGTCCTTCAGGTCCTGGCTCATACGGGTCTTCCTTCGGTGTGAATGGGTTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6425289-6424893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022434.1 Nocardiopsis dassonvillei strain HZNU_N_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6425288 30 96.7 31 .............................T TCGACCCTCCGGGGGCCGCGCCGGACCGCTC 6425227 30 100.0 31 .............................. GTCACGTGGGGGGAGAGCTTCACCTCCCCCG 6425166 30 96.7 31 .............................C TCGCGACCCGTCGGGCCCTCCGGCCAGACCT 6425105 30 96.7 31 ............................A. CACGGCGTGAAGTGGGACCGGGTTCACACGG 6425044 30 100.0 31 .............................. GCCCGGCCGGTCATCCCCGCCTACCTGCGCA 6424983 30 96.7 31 .............................C GCTGACCGACAACGAGATTGGTTCGATGACC 6424922 30 90.0 0 C.G.........................A. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.7 31 GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGCCGGTCGGTGTCCTCCTGGCCGTACTCCGCGATCCGGTCCCGGTCGAAGCCCTCCAGGGCCCGCCGGTAGTTCTCCCGCTTGTTGAGCACGGTGGACCAGGACAGCCCGGCCTGCGCGCCCTCCAGGACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCGTGGTCGTGGTAGTCCCGCATCAGCTCGGAGGACCCCCGTGCCCAGGCACAGCGCTGGTCGGACATGGCAGCTCCTCGGGGCCGGCGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGAGACAGTCCGGACGCGACCTCCGGTCGGGGTGCGTTGCGCAGGTGTCTCGCTGGTCGCGGTCCTGATCAGTAGGGCGAGTGCGCCGGTCCTGTGTGTGAAACCATGGGATGGTTCGGACTTGGCTCTGTGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGTCGCTGGTAATTTCCCAGGTCAGTGACT # Right flank : TGAGCAGGTTTTGCAGGAACTGAGAAGGGGCCGCCAGCGGAGAACGCTGGCGGCCCCTTTACGCGTGTTACCGGGAACGAACGCTGGTGAGGAACGCTGCCCACTCGGCTGAGGGCGCCTCCAGGTGACCGAGGTGACGGTTCTGCGTGTCACGGACGGCGGCACCGGTGCCGGTGTCCGCGACCTCGACGCAGTTGCCGCCGCTGGGCTGGCTGTAGCTCGACTTACGGAAGTTCAACAGGGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGACGGAGAGCGGCCAGGCGTAGGTGGTTCATCAGGTTTCTGTAGCGGGCGACCTCGTCGGGCTCCTCCAAGTAGATTCCATCGGTGTCCGTTTCCAAATAGACCACCGTGGGGTCGACCGATTCGGGGAACTCCAAGATGACGAAGGGACCTCCGCTTCCCGCGTTGAGCTGGGACGCGCGTGTCATCTGGAGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //