Array 1 3703-4133 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PZGG01000016.1 Staphylococcus simulans strain SNUC 1463 contig016, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      3703	    36	 100.0	    30	....................................	TAATGCGATGTAGCGTTCGATTTTTTCGAC	
      3769	    36	  97.2	    30	................T...................	AAAAAGAATTGCTTACTGAACATCTTGAAG	
      3835	    36	 100.0	    30	....................................	AAAGCGGTTCTACTTATTTGGTCACACGTA	
      3901	    36	 100.0	    29	....................................	TTATCACCAAAAACTGTATAAAACAATTT 	
      3966	    36	 100.0	    30	....................................	CATTTGAAGATTTTAAAGATGAGATTCAAA	
      4032	    36	 100.0	    30	....................................	TACGTTTTATTAAAAATCGCGATGTGAATT	
      4098	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         7	    36	  99.6	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                              	       

# Left flank :   ATTATCAAGCGAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAACAAGTTAGATTTAGAAAAATATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATACCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCGATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTTTTTGTTTAAAAAATATTGCGCAGTTTTAGAGGTTAGTCCTGTAATATCCAACTATACTCTCGGTGATATAATGGTTTTCGATGATTTAGATCTTTATGTAGTTGTTGCATTTTTAAAGCACTGCAAATTAGAGTACCAACTAGATATTGATCGAACAAAAATTTCTTCAGCATTATCGGCTTATCTATTTTCTTGACTATGATTAAATTATATAATTGTGCTAGAG
# Right flank :  CCAGATGGCGATGGATGGGCGAATATCGGGTGTTTCAGTACTCTGTAATTTTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTAAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATACTTTTTATTCAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCGCTTGTCCCATTTAATCCAGTCTTTACACAATTACTACACATTACGACTGCTATTCAATTTGCAGTACCTTGTTTAATCGGTGCTTTAGTTGCGTATCGCTTTAAATTTACACCTTTAGGTATCGCGGTAGTCTCAGCGGCATCCTTTATTGGTAGTGGCGCTGTCGTCTTTAA

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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