Array 1 1151914-1147800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016553.1 Aggregatibacter actinomycetemcomitans strain IDH781 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1151913 28 100.0 32 ............................ ATTAACGCCATCAAACGATTTATAAAGCTTAA 1151853 28 100.0 32 ............................ TTTATACGGGAAAAAATCATCACGCTGACAAT 1151793 28 100.0 33 ............................ ATTAAAAAATCGCCTTGGTTCAAGTCTCAAATT 1151732 28 100.0 32 ............................ TTGGGCGGTTTATGCTCCTTATTGACCGCCCC 1151672 28 100.0 33 ............................ CAACAGCAACCCCTACTCAAGCACCGGTTTAAC 1151611 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 1151551 28 100.0 32 ............................ ATCTAAACTACCTCCAAAATGTTCCTTACAAG 1151491 28 100.0 32 ............................ ATGATGATAAAACTACACAAGCTCAAGGTTCA 1151431 28 100.0 32 ............................ TATGGCTATTTTAAGAAATTTAGATATGTTTT 1151371 28 100.0 32 ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 1151311 28 100.0 32 ............................ TGCTCCACCATAAATCAAAGCTTTTATACCTT 1151251 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 1151191 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 1151131 28 100.0 32 ............................ TTTAATTGTGGCTATTGAAAATGGTTTACTAA 1151071 28 100.0 32 ............................ AACCAAGACCAAAAACTTTCAGATTATGAAGT 1151011 28 100.0 33 ............................ CTATAAAACAAGCATAGAAGCTTTTAAAATAAA 1150950 28 100.0 32 ............................ TTTGCCACCTTCACTGATGATTTTCCCTGTCA 1150890 28 100.0 32 ............................ TAATGAAAATAGAAGTCATTTAGGAGCAAGCC 1150830 28 100.0 32 ............................ TAACGCACAAAATAGTTAATCAAATTTGGGTA 1150770 28 100.0 33 ............................ CATTGGTTGTTGCGTTGCAATACTATTAATTAG 1150709 28 100.0 32 ............................ ATGATGACAAAACTACACAAGCTCAAGGTTCA 1150649 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 1150589 28 100.0 32 ............................ CTCTGAACAGTTGTCAATTCTAAAATTATATG 1150529 28 100.0 32 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTA 1150469 28 100.0 32 ............................ ATCTCAATTAGTGCAACGTCAAGGTGTAAAAG 1150409 28 100.0 32 ............................ AACCAAGACCAAAAACTTTCAGATTATGAAGT 1150349 28 100.0 32 ............................ ATAATAAAAATTTTTTATGATGTTTTTTGTAT 1150289 28 100.0 32 ............................ ATATCATCAACCGGCTTTAGAAGGTAAGAAAA 1150229 28 100.0 32 ............................ AATCAAGACCAAAGACTTTCCGATTATGAAGT 1150169 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 1150109 28 100.0 32 ............................ TTATTGCAAACTGTACGCACCTGAAATGATGA 1150049 28 100.0 32 ............................ TTGGCAATCGAAAACACTGTTACTATTAACAC 1149989 28 100.0 32 ............................ ATGTTATAAATTCATTTAAGGAAATTTACATT 1149929 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 1149869 28 100.0 32 ............................ TATATCTTTTTGTTTTAATCCTGCTGAAAAAA 1149809 28 100.0 32 ............................ TGACGGTAATTGTCCTTTAACAATAATATGCA 1149749 28 100.0 32 ............................ AAAATCTAAATTTTATGGTTTCAGATAATCAT 1149689 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 1149629 28 100.0 32 ............................ AAAATTAGTATCACTAAAGTTACTTACTTTAG 1149569 28 100.0 32 ............................ TTTGGGTGTAGATATTTTGTTTTACGTCCCGT 1149509 28 100.0 33 ............................ TAGACAGTCACCGGCACAAATATTAAAACAAAT 1149448 28 100.0 32 ............................ TCTCTTCCATACAACCGGTAATTCATTTTCAT 1149388 28 100.0 32 ............................ TAGAGTATTACGCAGCAAGATTAAATCAAGAT 1149328 28 100.0 32 ............................ AAGAAAAGGATTTATAACAGTTATAGTATTTT 1149268 28 100.0 32 ............................ ATAACTTCGCAAACTATGGCGGATTTCCGTTT 1149208 28 100.0 32 ............................ TTGATATGTAACAGATTCAGCATTGATTATGC 1149148 28 100.0 32 ............................ TTTACTCGGTCATCAAAACTGTTTGTGTCAAC 1149088 28 100.0 32 ............................ TTTTTCGCCCTGATCGCCTTTTGCACCTGCAA 1149028 28 100.0 32 ............................ ATGGCCCCTATGTCAATTGGCGGCATATAATT 1148968 28 100.0 32 ............................ AAAATCTGAATAAGCAAAAAGATTTACATATT 1148908 28 100.0 32 ............................ AAGGAAAATCCATTCACCTTCAATTAGACCTA 1148848 28 100.0 32 ............................ TACAATGTTAGACTTTTTTATTTCTCTTGTAC 1148788 28 100.0 32 ............................ AAAAACAAAATGCGATTGGTTTAATGATTTGG 1148728 28 100.0 32 ............................ ACAATACAAACTTAAGCCCAATTTGCGATAAT 1148668 28 100.0 32 ............................ TAAAGCCACGTAATAACTGCTGATTAGATAAT 1148608 28 100.0 32 ............................ TTCAGCAAATTTAAAATCACTTGTAAAAAACC 1148548 28 100.0 32 ............................ TACAGCTAATCCGTTCCCGACAGCACAACCGG 1148488 28 100.0 32 ............................ TCTGAAATAGCCAATATTTGCACCACTAAAAG 1148428 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 1148368 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 1148308 28 100.0 32 ............................ ACATTGGGTTGGTTGGCGTTATATAACTACTG 1148248 28 100.0 32 ............................ ATTATTAATAATGATTCAAAATGGGAAAAAGA 1148188 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 1148128 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 1148068 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 1148007 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 1147947 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 1147887 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 1147827 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGTAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGCGTGGAATCAAACGACTTTGTGCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAAAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1234557-1234787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016553.1 Aggregatibacter actinomycetemcomitans strain IDH781 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1234557 32 100.0 34 ................................ CGGAGTAATAGCAACTCAACGCGTCATTGACACT 1234623 32 100.0 34 ................................ TCTCCCATTTACAAAACATTATTATATTTAATTT 1234689 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 1234756 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TTACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2117782-2117415 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016553.1 Aggregatibacter actinomycetemcomitans strain IDH781 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2117781 33 97.0 34 ................................T TACAAATTTCCAACCTATCCATTGATTGTAGGTT 2117714 33 97.0 33 ................................C GTACAGTAATGGAAACAATGCCACCCGTAGCAG 2117648 33 97.0 35 ................................T ATGGAAACTTTAGATATGAATAAAGCTGTTGAAAA 2117580 33 100.0 34 ................................. ATCAATGGTACAAATTATAAATTAGGAATAGGTG 2117513 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 2117447 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 95.5 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //