Array 1 6038-3995 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGME01000106.1 Escherichia coli strain 8255a ctg9514370678, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6037 29 100.0 32 ............................. CTGGCAATGGATCGTATGAATCTTGCGATAGA 5976 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 5915 29 100.0 32 ............................. CTGGCAATGGATCGTATGAATCTTGCGATAGA 5854 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 5793 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 5732 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 5671 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 5610 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 5549 29 96.6 32 .G........................... TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 5488 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 5427 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 5366 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 5305 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 5244 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 5183 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 5122 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 5061 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 5000 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 4939 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 4878 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 4817 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 4756 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 4695 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 4633 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 4572 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 4511 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 4450 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 4389 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 4328 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 4267 29 96.6 32 ................A............ ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 4206 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 4145 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 4084 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 4023 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60129-59307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGME01000223.1 Escherichia coli strain 8255a ctg9514370798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60128 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 60067 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGTGAT 60006 29 100.0 32 ............................. TGTTTTCCTGCAATAAAACGACGCTCGTTACG 59945 29 100.0 32 ............................. CTTTCCATGTACTCATCCTTACGATATCCAAC 59884 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 59823 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT 59762 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59701 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59640 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59579 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 59518 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 59457 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 59396 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59335 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //