Array 1 477638-479307 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000001.1 Clostridioides difficile strain LC1-18-0803 NODE_1_length_736559_cov_43.0527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 477638 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 477703 29 100.0 36 ............................. ATACTATCACCTACTCTTGTTTTTGCTTCTCTAAAA 477768 29 100.0 36 ............................. GAAGATGAAAACGACAAATTAGAATGGGAACAAAAA 477833 29 100.0 38 ............................. TAGTGACTGGGCTGGTTTTAATGGAGGGGGAAGAGGTC 477900 29 100.0 37 ............................. AGGTTCTTTAAATAAGGAAAAAAGATAAATATATTTA 477966 29 100.0 37 ............................. GACTTCCTATAACGTTTATACTCACATTATAAGACGT 478032 29 100.0 37 ............................. TAGACAAGCAAATTGAAGAAGAACAAAAAGCAGAAGA 478098 29 100.0 37 ............................. TTAAAAAATCGAGAATTTGAATTAGATGATGTAACTA 478164 29 100.0 36 ............................. TTAGTTGCTGCTGTGATAGGTACAGTAACAGCAGCA 478229 29 100.0 37 ............................. CATTGTTCAAATTCAAACTTTCTATGAAGTTATTAAG 478295 29 100.0 37 ............................. ATTGGAAATGAAAAAAAGTCATTTAAAAATAAATTAA 478361 29 100.0 36 ............................. TGAGGGGTGCGTAAGTGATATATTTAAGCAATATTC 478426 29 100.0 37 ............................. GTTTCTAATGCTTTTTGAATTAGATTAGAACCCCATT 478492 29 100.0 36 ............................. GTTTTGTCTGGTGATAAAGAGGCAATGTCACTAGAG 478557 29 100.0 36 ............................. AGGAATTACAGGGTAATAAGATAAATATAACGGAGA 478622 29 100.0 37 ............................. CGTACGGATGTACGACGTAATTAAAATTTAATATAAA 478688 29 100.0 37 ............................. ACCCCTAACTCTACTGTGTAATGACACACAAACTATC 478754 29 100.0 37 ............................. TGTAGTTAATATAAAAATTCTTATTACAATATCATTT 478820 29 100.0 35 ............................. TAACCTTGTATTTGTCTAATACGATACAAAGCAAA 478884 29 100.0 37 ............................. TGTCTTTAGAAACAAAACTAATACTATTATTACTAGA 478950 29 100.0 36 ............................. TTATAGCATCTGTATTTTGAGCAATCTCCATGAATG 479015 29 100.0 38 ............................. TTTCGACCCGGTATATTTATTTTTTCAATCAAACGTTG 479082 29 100.0 37 ............................. TACTTTTTGAGTTCATAATTTGCACACTTAACCTCTA 479148 29 96.6 37 ..........G.................. TCAGGGTATGACTATTTATCTACTAGAGAAATTGACA 479214 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 479279 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 93275-93564 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000002.1 Clostridioides difficile strain LC1-18-0803 NODE_2_length_524982_cov_37.8112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 93275 29 100.0 37 ............................. GAAGCAAAGTTATTTACAAAATGGGTTACAAAAACAC 93341 29 100.0 36 ............................. CATACCAAGTCCAATATCTGCAATATTAGATTTTAA 93406 29 100.0 36 ............................. TTCCAATTTATTGTATCTCGTGAGTTAGGTAACAAA 93471 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 93536 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAACATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATAAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : ATTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGATAATGTATATAAAAAATAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 413229-410892 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000002.1 Clostridioides difficile strain LC1-18-0803 NODE_2_length_524982_cov_37.8112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 413228 29 100.0 36 ............................. ACTCCTGTGCCTGCACTATTAGAATTATAAGTACTT 413163 29 100.0 36 ............................. CTCTACCATAAATAGATTGTAGTTCTTCTTGCTTTT 413098 29 100.0 37 ............................. TCAATAGGACCATATCTAATAGAATATTTGCTTTTCA 413032 29 100.0 37 ............................. AAGTGCAAGAGCTAGTTATGCAGATACAGCAGCACAG 412966 29 100.0 36 ............................. TTGGACTTAAACCGCTTAAAGAACTAGCAGGTATAA 412901 29 100.0 37 ............................. TTGTGTAACTTAATATCAATAATAGCGATAGTATTGA 412835 29 100.0 38 ............................. TGATTTTTCTATAGAATTTGAAAAGAAAATGGATAAAC 412768 29 100.0 37 ............................. ATGTACAAAAACAAAGCTCCCTGGCTAAATGAAGTGA 412702 29 100.0 38 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACACCTGATGA 412635 29 100.0 36 ............................. TTATGACCTAATCGCTAAGAATGTACTTTTTTTAGC 412570 29 100.0 38 ............................. TAAAACAATTGAATAAATATAATAAGATGCAACACAAA 412503 29 100.0 37 ............................. TATCTTTCTTGGCTTTTACCAATCAAGTCTATGTCTG 412437 29 100.0 37 ............................. TTAATGTTTGGAAGACATTACTCGGGATTAATACCAA 412371 29 100.0 36 ............................. TTTGCATGGTACTAGACACACATATATGCAGTTGGC 412306 29 100.0 38 ............................. TTAGCTAAAGATATTGCTAATGGTGTATAAAAATTAAA 412239 29 100.0 36 ............................. TAAAACTACGATACCTAATAATACTTCAATTAAAGC 412174 29 100.0 37 ............................. ATTTTTTATTTAAACTTAGTAACTAAAAATCTATTTA 412108 29 100.0 37 ............................. GACAAAAAATGAAAGTTACTATGAGGAATATAATATA 412042 29 100.0 37 ............................. TCTTGCTTACCATGTTTGAAATTTTCAATAATGACCT 411976 29 100.0 38 ............................. TCAAAAGTACCATCTATTTGTATTTCTATATTTTCATC 411909 29 100.0 38 ............................. TTAAAAATACTAAATGCAACTGCTCCTAAAACATATAA 411842 29 100.0 37 ............................. TGGTATTTGCTAATATTGATTAATAGTACTCGAAATT 411776 29 100.0 37 ............................. TAATAAGCTGTAAAATTTGTGTCGTTATCATCATAGC 411710 29 100.0 37 ............................. GTTTTAACATATTCCATAAATGCCTGTCTATACTCCA 411644 29 100.0 39 ............................. TCGCTTCCCGCGCTTTCTGATTCTAAATTTTTATTGCTA 411576 29 100.0 38 ............................. CGGATTTTAACTGGTTTTATGCAACAATATAACGCTAA 411509 29 100.0 36 ............................. CTCCTTAACCTACCGCATAAAAACGAAAACTAGAAC 411444 29 100.0 36 ............................. TATCGAACTGATAGAGCTGTTAAGCCTGGTACTTGG 411379 29 100.0 35 ............................. TCACTTGGTACTGTACATGGATACGCTGTATTCGA 411315 29 100.0 37 ............................. CAAGCATTTTCTAATATACTTGTATCAATACATTCCA 411249 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTG 411183 29 100.0 36 ............................. TTAGAAATTTTACTTGAAAATATTATACTAAAGGAT 411118 29 100.0 37 ............................. ACTCGACTGAACATAGAAACAGCTTTTACAACTCCAA 411052 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 410986 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 410920 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ======================================= ================== 36 29 99.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAATATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCCTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 40151-39926 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000010.1 Clostridioides difficile strain LC1-18-0803 NODE_10_length_138883_cov_39.8587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 40150 29 93.1 36 ...............T.......A..... GAAACACAATAGATGCATATGCTCAAGGTATATCTA 40085 29 96.6 36 ...............T............. AGGGGAATAGATGCAATCAAAAATTTGGGTGGCACA 40020 29 89.7 37 .G......................C...T AACACTATAATGGAAGAACTTATAAAAGAATTAAAAA 39954 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 94.8 37 GTATTATATTAACTAAGTGGTATGTAAAG # Left flank : AGGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGCTAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATATTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTATTCACTGCAATTTTAATATTGTTTTATATATGCAAGGATTGAAAATACTCAATTTATTTTGG # Right flank : AATAATTGATGAAAAAACATTTCTTGTGTTATATAATTAAATTAAAAAATATGTTTAATTTATAGTGAAGGAGAATATCATGGCATTATTTGGGGATAAGATTAGTAAAGAAGAAAGAGAAGCAACAAAAGAAAGAAATAAACAGTTTTATGAAAAGATGAAGAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATTCAAGAGTTTATGAAGAAATATCAGTTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGTAATGGTCTTATTAAGACTGGAATGGCTTTGAGTTTTGCCGAAGCAAAGGAACAAGCAAAAATAGGATATCTTAGCGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATAACAATATAGAAAAACTTATAGAAGATAAAAAATAATGGACTGAAAATAATAATACACAAAACACTTACTTAAATAGTAGGTGTTTTT # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 121070-120381 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000010.1 Clostridioides difficile strain LC1-18-0803 NODE_10_length_138883_cov_39.8587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 121069 29 100.0 36 ............................. ATTCCTAGCACAAGCAATATGATTGGAATGTATTTA 121004 29 100.0 36 ............................. ATATATTCATGCTCCACAAACTGGTGACGTAGTAAA 120939 29 100.0 37 ............................. AATGATAAAGCTGGTCGTATTTCATTTTGGAATGATG 120873 29 100.0 36 ............................. TACGAATGTTCTATAAATATAGAATTATTTGTCTGT 120808 29 100.0 38 ............................. CAAGTAATTTAAGATGGGATAATATAGACTTTGATAAT 120741 29 100.0 37 ............................. GTTACCTGCATCATCTTGTACCTGTCTTGCTCGAGCA 120675 29 100.0 36 ............................. TGAAATGTGAATTATTTTCAAATGTATGTTTTACTT 120610 29 100.0 40 ............................. ATCATATTAAAATGATAATTTTAAATACTTATTTATTCTT 120541 29 100.0 36 ............................. CAAAACAATTAGTAGCACTACTTAAAACAACAGCAC 120476 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 120409 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCGCTATTGCTCGTTTACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 257210-255526 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000003.1 Clostridioides difficile strain LC1-18-0803 NODE_3_length_431349_cov_50.2469, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 257209 29 100.0 35 ............................. TTATAATCCAACTAAATTCTTTTAAATAACTACCA 257145 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 257080 29 100.0 37 ............................. TGTTTATTTGTTGCATCACTATCTTTTGTATCATCAA 257014 29 100.0 37 ............................. AGGTGCTATAGGAAGGTAGTTTTTATGGAATATCAAG 256948 29 100.0 37 ............................. AGCTTTACAATATCAAAGAAAAATTGAAACATCTATG 256882 29 100.0 37 ............................. AAGCATTTTGTTAGTTTATTTCAAACTTTAGAGGACT 256816 29 100.0 55 ............................. CCAACTAGGTGAAAGAAGTGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTTA 256732 29 100.0 36 ............................. CCAACTAGGTGAAAGAAGCTTACCCAAAAGTATCAC 256667 29 100.0 36 ............................. AGTTTATCAAGTAAACTTAACATTTGAGCGTTATAC 256602 29 100.0 34 ............................. GGTCATGTTCTTATCATATTAAAGATGTTCATAA 256539 29 100.0 37 ............................. TCATTCGTACTGTTAGTGGTAGCTGGTCTAGTAGCTG 256473 29 100.0 36 ............................. ACAGATAAGTGTAAGGAACTCCCAACAAACCCAATA 256408 29 100.0 37 ............................. TATTTTTTGAGCTCGTAACCAGCACATTTAACTTCAA 256342 29 100.0 37 ............................. TAATATATGACTTATAACTTTGATTTTTTGATTTTAC 256276 29 100.0 37 ............................. ATCGTAATGTCTTCAATCTCAAAATGTTGATTTTCCA 256210 29 100.0 37 ............................. GTACCCCTTTAACGAAATTAAAATTGAATCTAATAAT 256144 29 100.0 37 ............................. TCTCAACAACTTCTCTAGTTTTATTATAAATACGAAA 256078 29 100.0 36 ............................. TACCATACAACTATACAAATAAAACTCTGAAAAGGC 256013 29 100.0 37 ............................. CCCACAAGGTATTCAAAGAGAAATGAAGTTAGGAACT 255947 29 100.0 37 ............................. AGATTAAGTCAATCAGAAGTTAAAGAGTGTTTGAAAA 255881 29 100.0 37 ............................. AGAGCACGGCAAAATATCTTTCGAATACGAAACAATC 255815 29 100.0 37 ............................. CTATATTCTTTAATGCTAAAGTATTTATAATACTTGT 255749 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 255683 29 86.2 36 .........C............GA...G. AGAATATTAACAATATCAACGAGTATTTAGAAACTT 255618 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 255554 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================================= ================== 26 29 97.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAATTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : AAAATAAACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAATAAAATTTATGATAAAGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 185991-187004 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000005.1 Clostridioides difficile strain LC1-18-0803 NODE_5_length_284204_cov_45.5569, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 185991 29 100.0 37 ............................. CTGGGATTATAATAATATACACTTCTTCTAAAGTAAA 186057 29 100.0 36 ............................. CATCATTAACTAATTTTCTATACTTCATTTTATCTA 186122 29 100.0 37 ............................. AAGGAATAGTTTAGAAAGGAGAGTGAGAAAATGGCTT 186188 29 100.0 38 ............................. TTTCTTCATTGCGCATAATTTCATATATAGCTTCTCGA 186255 29 100.0 37 ............................. CTTATATGTCTTTATAGAATTTCTACTTTGTCTATTT 186321 29 100.0 37 ............................. TAAATTTTGTGGTTATATTTTCTTCTTGTCCTGCCAT 186387 29 100.0 36 ............................. AAAAGTGCAACAGCTCCTACAGCAATCATAAAAAAG 186452 29 100.0 37 ............................. TCAAAATTATTTAGTTATACTAAACATTATATTATAT 186518 29 100.0 36 ............................. TTCACACATGCTATGAGCTACTAACTTTTTTAAATC 186583 29 100.0 36 ............................. ATAAAAAAAGAACCTCCTATACTGTTGGTTCTGCTC 186648 29 100.0 37 ............................. GTAGATATAAATAGAATAAGAGCAGGTGACAAGGTAT 186714 29 100.0 36 ............................. CTGCTCTAAGCTGTGCGGCTATTTTTAATCTTTCGT 186779 29 100.0 36 ............................. ACGAAGCAGAGTATTTTAAAAAAAGTATTTTAAGAT 186844 29 100.0 38 ............................. AAAATATATTTGTATCTATACCAAACAGGAACAACTAA 186911 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 186976 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 99.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCATATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAGATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATCGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGTATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 107670-109153 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVB01000008.1 Clostridioides difficile strain LC1-18-0803 NODE_8_length_199976_cov_40.6067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 107670 29 100.0 37 ............................. AGGTGTGGCTCTGTTTCATTGTCTGCTCATAAGAAAG 107736 29 100.0 36 ............................. TATATTAACTGGAACATTTCGTTCTATAAACATTAA 107801 29 100.0 37 ............................. GAAACAAAGAAGGTCGTAATATTGATTTTGCAATAGT 107867 29 100.0 37 ............................. TTGGTTGATGCAATGTCTAATTTTAAAGACAAGTTTC 107933 29 100.0 38 ............................. GAATATCTTCCTTATACTTATAGGAGTTGGAATTATAA 108000 29 100.0 36 ............................. GTATTTTTAACAGAAGATGAGGACTCTGTACATGAA 108065 29 100.0 38 ............................. ATAAATGCAATGAGACAAAATAAAAAGTTGGAAAAAAC 108132 29 100.0 36 ............................. TTCTTCTTTTTAGAATTATAAATATCCATGTTAATA 108197 29 100.0 37 ............................. TGATTTATCAGTTTACTTTAGAAATCGCTCAGATAGT 108263 29 100.0 38 ............................. AAGACTGGAGTTAAATATACAAAAATGTTTATTGGCGT 108330 29 100.0 37 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACATCTAATG 108396 29 100.0 38 ............................. CTCAAACTATACCATTTCCCTTGCCATTTCTTATGATT 108463 29 100.0 37 ............................. ATAACTCATTCCATGTAACTCTTCCTTTAGACGCTTT 108529 29 100.0 37 ............................. GAGCTTTTAAAATGCACTGAATACTCATTTATTACAT 108595 29 100.0 37 ............................. TTGCCTCTAATTCTTTGTCATTTAACTTGCTAAATTT 108661 29 100.0 39 ............................. TTTGTTGACGCTGAACTAATCGAACATGTTGCTTTGAAA 108729 29 100.0 37 ............................. ATTATTTCAGTCATTGCAATTTCATTGAACAATTCTA 108795 29 100.0 37 ............................. GTCTTTTATATCTGTTAGGTTCATCAAAGGCAATTCC 108861 29 100.0 38 ............................. GAACATAAAGATGAAGTAAATTCAGCTAAGTTAGCAGT 108928 29 100.0 37 ............................. CATATTTCGTCGCATATATCTGTATGAGGATGTGCCA 108994 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 109059 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 109125 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 98.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGGTAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //