Array 1 2896509-2896180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056034.1 Erwinia amylovora strain TS3128 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2896508 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 2896448 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 2896388 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 2896328 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 2896268 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 2896207 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2907956-2905972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056034.1 Erwinia amylovora strain TS3128 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2907955 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 2907894 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 2907833 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 2907772 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 2907711 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 2907650 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 2907589 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 2907527 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 2907466 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 2907405 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 2907344 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 2907283 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 2907222 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2907161 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2907100 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2907039 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2906978 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2906916 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2906855 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2906794 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2906733 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2906672 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2906611 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2906549 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2906488 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2906427 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2906366 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2906305 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 2906244 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2906183 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2906122 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2906061 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 2906000 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2921026-2918863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056034.1 Erwinia amylovora strain TS3128 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2921025 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 2920964 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 2920903 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 2920842 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 2920781 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 2920720 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 2920659 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2920598 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2920537 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 2920476 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 2920415 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 2920354 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 2920293 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 2920232 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 2920171 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2920110 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2920049 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 2919988 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 2919927 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 2919866 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 2919805 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 2919744 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 2919683 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 2919622 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 2919561 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 2919500 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 2919439 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 2919378 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2919317 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2919256 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2919195 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2919134 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2919073 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2919012 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2918951 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2918890 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //