Array 1 31649-34025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNF010000058.1 Bacteroides salyersiae strain D40t1_170626_D4 NODE_58_length_34238_cov_7.13817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 31649 35 100.0 38 ................................... CAAATACTGCAACAATAAGAAATACGCAGAGCTTTTAA 31722 35 100.0 35 ................................... AAAAAAGACATTGCAACATGGGCACTAGTTCAGTC 31792 35 100.0 44 ................................... TACATTTCGAACGGCACATGCAAATCATTGAGCAGTTGTGCCGC 31871 35 100.0 34 ................................... TTCCGGAAAGCGCTGTGAGATGTATCTCGGTAAA 31940 35 100.0 37 ................................... GTAAGTTTATGCATGACACGGCCAAAGAAGATATGTT 32012 35 100.0 33 ................................... CTTGCAGGTTCTCGCCCTGTTAGGTATGGACGC 32080 35 100.0 34 ................................... ATTGTTGATCATTTGAGTGAGGAATTGTCTGCAT 32149 35 100.0 40 ................................... GCTTTAATTGGTGCATTTGTCGGCGTTTGCTGCAATGTAT 32224 35 100.0 37 ................................... AATGTATTGCTTCTCACCTGACGGAAGACACTCATTC 32296 35 100.0 36 ................................... CTGCTCAAAATTACAAAGGGTTTTTAACGAAAAAAA 32367 35 100.0 37 ................................... GTGTAAAAGCCGCCTACAAATTTGATATCTGTAAGAT 32439 35 100.0 38 ................................... TTAAAGCGATCAAAGCAAGTGAAAAATTAGCTAAAAAG 32512 35 100.0 34 ................................... AAAATTGCACGTTGGAAATGGTTAGGGCAATGCC 32581 35 100.0 37 ................................... TTCTTCTCATTCAGATGGAGAAGTGATTATGGAGAAA 32653 35 100.0 35 ................................... TCGAAGTGATTGCACCCTCTCCGTATTTTCAAAGT 32723 35 100.0 38 ................................... TTTAGTATGGATGGTTGTTTGTGCAGGTATTGGCGTAT 32796 35 100.0 36 ................................... GTGTCATGAAAGACAATGCCAAACTTGCTATATTTG 32867 35 100.0 38 ................................... TTTTACAGACAAAGAAACAGTCGAAACTGTATCTGAAT 32940 35 100.0 33 ................................... AGTTATCTCCACGATACTATTAATAGTAGTAAT 33008 35 100.0 36 ................................... TTCACCAAATTCCGCTGACAAAAATGAACCGCGTTT 33079 35 100.0 37 ................................... CAATCACGACTTCTCTGGTCAAACTGACGGAGAAAGT 33151 35 100.0 33 ................................... ATTGCAGATTCTGACAGATATTCGAATCAACGA 33219 35 100.0 36 ................................... AAAAATTAACTGCGAATGGTCTGCAGATTCTGCAAC 33290 35 100.0 37 ................................... GAGAAGAGGAAAATAAGATATTAAGGGAAGCACAAAT 33362 35 100.0 33 ................................... TTTGGTGTTAATACTCAAGTGGATGCCAAAAGC 33430 35 100.0 38 ................................... ATACAATCAAGGGGCTTAAGAAAAGCTTCGATTGTTCT 33503 35 100.0 34 ................................... ACCATGCTGGTAAAGCGAGATGTGGACACAGATA 33572 35 100.0 38 ................................... ATGAATTATGGGGCGGTGATAATTACTCGGATTTGCAA 33645 35 100.0 35 ................................... TTTACATGACACGCCCCCTAACTTTTTCCGTTGAA 33715 35 100.0 33 ................................... AGCGTAAACTTGGGTTCCGTTGAAAGCACCAGC 33783 35 100.0 36 ................................... AGCTATGCTCGGACAATTTTCAAGCTTGTCCAAAAT 33854 35 100.0 33 ................................... GCACGCTCTACTGGAGAACCTTTTAAAGAAACT 33922 35 100.0 34 ................................... AAAGTATTCGTTCTTATCTCTCTTGCAATTGCAA 33991 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 34 35 100.0 36 GTCTTAATCCTTATTCTACTGGAAGTAACTCAAAT # Left flank : GTGCCGGTTGATATATGATTTTTGTATAACAATTGACGCAAATCGGATAGTATATGACTGTATCGGAGCGTTTATCCAATATTTTTTTTATTTTCTCTTGCACTTGTAATAGTTGGATATCGGTAAACATACATTCGAATACACTGAAATTGACTCTTATTCCATATTTTTCCAGAATTTTAGAGACGCGTGCTCTTTTCCGGTCTTCTTTAATATCGTATGCTACGACACAGAATGTCTTTTTTGCTCTTGCCATTTGGTGTTGCGTATTTGGAGGTAAATATAATGAAAATGCGGGATATGTGGTATTGGAAAAGAAAAATTTTGAGGTTAAAATGGGGTAATATTATTAGAGTGAATTAAAGGTGTATGGATGTATCATTGTTTCTGAATTCGGGATAATGAGATATAAATGATTTTAGAGAGTTGCTTGTCTTAATATTCTACTGGAAGTAACTCAAATACGGGATCTGGGTTGTGACATGGCGTAACGGAGAAAA # Right flank : ACTCTGATTATCAATAATTTATTTTTTACTCTTTGTTTTGTATATTTCTCATAAAGTATTGTTATTTAATACAATACGCTATATTCCAATAACTTTTTCGCAAATGTATGTATTATTTTTAAGAAAATCAATAATTTGTTTGGCTAATATAGGCTTATCTGCTTAAAAATAAGATATTTACATTGAATATCTATTTTCGCAAATGATTTTGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTCTACTGGAAGTAACTCAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 28871-26750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNF010000016.1 Bacteroides salyersiae strain D40t1_170626_D4 NODE_16_length_94572_cov_7.21575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 28870 30 100.0 35 .............................. AATAGACATGCAGCGTCCTAATTACGATGGAAGTG 28805 30 100.0 36 .............................. CTTGGAGGTTATGGCGCACCCGTATTAGACACGTTT 28739 30 100.0 36 .............................. ACTGTTGGATGTGTTAGTACAACTGCTGATAGCTCT 28673 30 100.0 34 .............................. TGATTCCTCGCTAATTGTTAATGTTACAAATACT 28609 30 100.0 34 .............................. TCTGAAATTGCAATCAATGCATTAGCAAAGGATT 28545 30 100.0 35 .............................. ATTGATCACAAGGGTCAGAAGAGACATCAATAATA 28480 30 100.0 35 .............................. GTTTATAATATCTACACAGGACAGTCTGTTTTGTC 28415 30 100.0 34 .............................. CCAGCAATACGACTTGCAATGTAATCAATAGGGA 28351 30 100.0 36 .............................. TTGATTACGATCTGCTTGATTGTTCTTCACGTATTT 28285 30 100.0 34 .............................. AACACTTTCCGGCTTCATTTTAGAACAATCATAA 28221 30 100.0 37 .............................. AAAGGTGTACCTAAAGGTGGTAGATTTTGCATACCTT 28154 30 100.0 34 .............................. ACTCATAAAGTTTATATGTGTGTTTTCTGTCATC 28090 30 100.0 34 .............................. GAAATTCTTACACAGATGACCGACAATATTCAAT 28026 30 100.0 34 .............................. CCTTCTAATTTGTCTGGTACATCTTTGAAATTTT 27962 30 100.0 37 .............................. ATATTTTATTTTCGCTGCAACTTCTTCAGTTTTCATA 27895 30 100.0 37 .............................. ATGCTAAGAAGCAAGGTAAACTTACGGATGAGCAAAT 27828 30 100.0 34 .............................. AAAAGCAATCAGTGCAAAAAGACAAAGAGATTAT 27764 30 100.0 36 .............................. GACGAACGATTAAGATATGTTACAGCAGCATGCGGA 27698 30 100.0 35 .............................. AGAGATTCGGTAACGGGAGCGCCTTTCTTATCATA 27633 30 100.0 34 .............................. ACTGTTGTACAATCGTATAGGACAGAAAAATATA 27569 30 100.0 38 .............................. CACTTTGGGAGATGCTCATTATTATAAGTCAAGGTAAG 27501 30 100.0 35 .............................. TAAGTTGAGCGTTTGCTCGGGTATCTACCAACGCA 27436 30 100.0 35 .............................. ACATTGTTCAACAAATTTCAATTTAGAATGCAAGG 27371 30 100.0 35 .............................. TTCGAACGTCATTGGTACATTGTTTGATGCGTTTA 27306 30 100.0 36 .............................. ACAAGATTAAACGAAGAAACACAATACAACGAATTA 27240 30 100.0 35 .............................. CGGGAATTCAATAAATGCCACCCGGCTGGCAGCCG 27175 30 100.0 36 .............................. ACTTTTGAAGTCAAGGTATTGCGGTTTGTGTACGAT 27109 30 100.0 34 .............................. GATTGGCGCGGTCGCTTTCGATGATTTGGCCATG 27045 30 100.0 38 .............................. TGTCAGAAGCATCAACCGTTCCATCACCTGTAATCTTG 26977 30 100.0 37 .............................. CTGTTTCTTACGCTTACCTATAATAATGAACATCTCC 26910 30 100.0 36 .............................. AATTGACCTAAGGTTATAAATATACCTAGTAATGTA 26844 30 96.7 35 .................A............ TAATAATTGGCAGCAGTACCCATTGCACAGGCATC 26779 30 86.7 0 ............T....A..A.......T. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.5 35 GTATTAATTGTACCGTTGTGGAATTGAAAC # Left flank : CCTTTAAAATGTATTGGTAAAATATGTATGTCATTTTGGTTTATGATTTTGGCGAAAGACGAGTTGCAAAGATGCTGAAGCTATGTCGTAAGTATTTGAATTGGATACAAAATTCCGTATTTGAGGGGGAAATATCAGAAGTACGATTAAAGGAAATGTTATCTGCTGCAAAGGCTTTCATGAAGGAAGATGAAGATAGTATTATTGTTTTTAAAGGTTCCTCACAATGTTCTTTGGAGAAGAAAATTATCGGGAAAGAACGGTGTAGTATCGACAATTTTTTATAATTTAGTTGTCGATAATTGTTTTTATTGTCTTTGCAATAAGGCTCTACGTTGTAGATCGTTCTTTGACGTGTTGATATACAGTGAAATAGCTGCTATGTCGATGTCCGGCATTTTTTATGTTATTATCCATCGACATAATTAATCATATAAAAAGCATATTTGTTATTTGCTAACTCACTCATTTTTAATTGTTTTTTTTGAGTGTTTGTTAGA # Right flank : ATGTGAACCGTAATTTTGTTGGAACAGAGTGTTGTATGTTAATAGCACTACCATGAAATGAGATTTTATAGATTACTAAATGAAAGGGTGATCTACGTCACATTGTGAGCGCTTTAAATACCGGTTCTGCCTTTTGTATTTCTGATTCAAATCCAAACCAGTATCCTGCTTGTCCTTCTTGATTGGCGGGCAGGAAACATAAGCGTAATGTCTCTTTGTACTTGCCATAAATGGTTATCCACGTTTCGGGAGGGATTTGTCGTTTCGTTTTTACTTTTTCTGCCGGAAGTTTCTTTAGTGACATGCCCGCTTCTATCCAAGCAATGCTGACCTGTGTCTGATAGGCCGGATAATTTTGCTTACAGAATTCATACAAAATCAATCCTCTTTTTTCCAAGCTCAGTGGTTGGTCTATCAAGCCGATTTGCATAAGGTGATCCAGAAAATGATGCAAGAAATGTTCGTTTTCCAACATCAGTGTCCGAGTGATGTTTTGCCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCGTTGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 43142-42587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNF010000016.1 Bacteroides salyersiae strain D40t1_170626_D4 NODE_16_length_94572_cov_7.21575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43141 30 100.0 34 .............................. TGATTTATAGCTACCGTCTGATATTGCGATCCGG 43077 30 100.0 36 .............................. CTGAATTCTATTTTTTCGAGGATTGACTCACGAGTA 43011 30 100.0 36 .............................. ACGACTGGATGATAGTAGAGTAATCACATTGCCATG 42945 30 100.0 36 .............................. TGATTTTCAGCGTGTTTTATCAAAATTTTCGTTTAG 42879 30 100.0 35 .............................. GAGCTTTCATGCAGGTTGCCAAGGTCGAAGACAGG 42814 30 100.0 36 .............................. AATGCATTATTCGTTACATTAACAGTGACAAACGAA 42748 30 100.0 35 .............................. AGATTATTCGCTAATAAAAAAGGAACAGGGGTTTT 42683 30 100.0 37 .............................. CGGATTGTAAGCCCCCAACGGGTTACAGCTTTTGTTT 42616 30 80.0 0 ........................AACTTG | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 36 GTCTTAATTGTACCGTTATGGAATTGAAAC # Left flank : AAGCAGAAGTAAAAGAAGGGAAACGTCATGGACGTTATCGCGAATATTATGAAAATGGAAAACTGAAACTTCGCGGGAAGTATGCCAATAACTTACCTAAAGGTACATGGAAGTATTATACGGACGGGGGGGAGTTTGAACGTAAAGAGAAATATTAATTGTTATATTGGGCTTTGATATAGTTTTATTAAATAGCAAACCTCTGATTGATCAGATGAAAATGCATGCTTAATTATGTATTACTTATTTTTTTCTTAAGAAATAAAATTATGTCGGAATTTTATTTGTAATTTAGTTGTCGATAATCGTTTGTATAGTCTGATTAATCAGGATTGATATATAAATTGTTCTTTGAAATGTTGATATACAGTGAAATAGCTATTGTGTCGATGTCCCATGCTTTTTATACGATTAACCATCGACATAATTGATGTTATAAAATGGTGTTGTTTATTGGATAACTTGCTTATTATTAGATGTCTTTTTTGAATATTTAATGG # Right flank : AGATTACTCTTATGTGTAATCTTTTGCTATCTATGTTACTACTTTTTTATTTGTTAAAAAATACAAGAAGAAAACGCGCAATTATATTCTTTTATATCATTTAACATCAGATAATTAACCTAATTTCTATTTTTGAGACCCCAATTCGACAATTCATATTTAATTATTAACCTATATATTTTATATGACTATGCGAACTAATTATTTATTATTTTTAGTAATCATGTTGGGAATATTTCCCTTGAGTCACACACAAGCATCCGATTCTATTTCAAACAATGTAGTACTTTATTCTCCTTACACGAAAATCTCAGTATCGCCCGGAGAAAGTATTAACTACAGTATCGATTTAATAAATAATGGTAGTGAGATTTATAATGAGAATATCTCATTGAGTGGATTGCCGTCCAGTTGGAAATACGATATAAAATCCGGTAGTTGGAATATCAAACAATTAGCTGTACTGCCCAATGAAAAAAAGAATTTCAGTTTAACGGTGA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATTGTACCGTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //