Array 1 87977-87222 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKAX01000006.1 Staphylococcus gallinarum strain NBRC 109767 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87976 36 100.0 30 .................................... GGGTTTTTATTATGTCAAAAAACAGCAGTT 87910 36 100.0 30 .................................... GTAATCCAGATAAGTTTAAAGGTCCTAAGG 87844 36 100.0 30 .................................... CCTCCATTACTTAAAAACTATAATCGCGCT 87778 36 100.0 30 .................................... CAAAAGATAGATATAGATTGATTCATCTAA 87712 36 100.0 30 .................................... TCTTCCGTAATTTCTTCCTCGACTTCGACT 87646 36 100.0 30 .................................... AAAAGAAAATCATCGGTATGTATTTAAATA 87580 36 97.2 30 ...................................G TACAAAAGATTGAAGATTACATTAAGTTTA 87514 36 97.2 30 ...................................G GGATTTCTTGAAAGTCTTATTAAACCATTT 87448 36 94.4 30 ..............................A....G TAGAAACAATTAAGCAAAATCTTGAGTGTT 87382 36 97.2 30 ...................................G ACCCACAACATGTAGCGTATGAGTGTTCAA 87316 36 88.9 23 ............................G.A.T..A GTTAGCTTTGACTGAAAAAACAG Deletion [87258] 87257 36 91.7 0 ............................G.A.T... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.2 29 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAC # Left flank : ATTATCAAGCAAAAGAAAAAGCATTTGTTATTTATTTATATCCAGAAGCTGGTCTTAGTATAAAAGAACAAATGAGGTTTAGGAAAGTGCTAAACGACTTACCTATTCCAGTTATTGTTTTAACTGAATCACCATATTTTTTATCTGAAAGTTTTAAAGGACTAAATTATTTTATTGATAATGTTCAAATGATTACCGAATCATTTTTTGAAAATAGCTATTGGAATGCTCCGATTAATTTGGAAAAAGAACAGATTGAAGAAAGGTTGGAATTTTTATTTGTAAAATATTGTTCAGTTTTAGAAGTTAAACCGACTATTTCCAACTATTTGCTTGCAGATATCATTGTTTTTGATGATGTTGATCTTTATATCATTGTTTCATTTTTAAAGCATTGTAATCTAGAGTATCAATTGGATATTGATAAATCAAAAATTTCATTAGCATTATCGACGTATCTATTTCTTTAATTATTATTCAAGTATATAATTGTGCTAGAG # Right flank : CATTTTCTAGCTTTTTTCTTCGATAATACGGTTTTAAAAGCACCTTGAACATCAACAATTTCCTTGATTGTAAGTTGTTGATGTTCATTTAATAAATTAAATACACCAATTTGTTCTTTAGAAATTGTCAAATCTTCCTTAAGTAGAGAGTTATTGATTGTATCAATTGTTGCAATGAAATAAAAGTTAATAGTTAAGGTAGATATAGATTTTATTATACATTTTTCCCCTCTGTATATACTATGTTTCTCTTGGGTGTACTAAAGTGAAGAAATAGCATGCTATTAGCATATTTGTTTCATTGACTAATTTTCAGATAAAATATATACTATTTTCCAACGGTTAAACTAGTATATATTAGTAAAACTTAATAAAAGGTAATTATATTTGTTTGAAGCATATCAAAAATGATGCGAGTAAAACTTTAGAATTGAGATGAAAAATTACTATGATTAATATGCTCGGGTACAGAGTAAACCATTGGATTATTTCATAAAATA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //