Array 1 29814-30245 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTVV01000027.1 Ruminococcus sp. AM54-1NS AM54-1NS.Scaf27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29814 36 97.2 29 ......T............................. TGTTTGAATGCTGTGGCGTCGGTGTAGGA 29879 36 100.0 31 .................................... GAAGAGCGTTATGTCGTATCGTTCACCACGG 29946 36 100.0 30 .................................... CCTCCTGTTTGTGTTTCTTTAATCTCCTTG 30012 36 100.0 30 .................................... TGAAGTCCTCTGCATCAAAATCTACGTCCT 30078 36 91.7 29 ......T.......A..T.................. CTTTGCGGTGCTGAATCCGTGATAAATGC 30143 36 94.4 30 ......T..........T.................. TACAACAACTTTTTTATTTGTTCTACTAAG 30209 35 91.7 0 ............................-..C...G | GG [30240] ========== ====== ====== ====== ==================================== =============================== ================== 7 36 96.4 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : ACGTTTGTGTCACGCTTGGGCAGAAATGTGCTTGGGGGTATGAGCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCATAGAAAATTATTTTGCTGAAACTATAATAAAAATGCCGTAAAAACGTGATAAATGTGCAAAAACATAGACAAAAAAGTTTTTGAAAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATTACAAAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : GTTTAACATCGAAATCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGTTCCTGCGATCGCTGCCATGCCTGCTGTAGAGGTCATTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTCAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAATAATGACTACAACAAAACTCAGCTTTCATCAAAGGACAACAGTAATATCGAGCTTGGTAATGTAAACGAAGTAAACATCACTTTTTCAAGCAGACGTGGCTTTGAGAGCGGTGTGGAGATAAACACTTCAAACCCTACTCACAGAAGCGGTGAA # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2512-2056 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTVV01000018.1 Ruminococcus sp. AM54-1NS AM54-1NS.Scaf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2511 29 96.6 32 ............................C TGTAAACTCTGCGCCTGCAAGAGCCTTCTTCG 2450 29 100.0 32 ............................. GGGTCGCACCGATGTTTATAAACGGAGATATT 2389 29 100.0 32 ............................. AAAACAACACAAGTACAAACTCCTAAGCTGGT 2328 29 100.0 32 ............................. GACCGAAGAAGAACGTTGTCTTGAACGAATGA 2267 29 96.6 32 ............................C GAAATGCTCTTAACTGCTATATGCTCAATGGA 2206 29 100.0 32 ............................. AAATGGAGAAGAAAAAAGTAGTGATACCAGTA 2145 29 100.0 32 ............................. ATCACAGTATGCTATAGGAAATGTAATCTTGG 2084 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 CTTTTCCCCGCATACGCGGGGGTGATCCT # Left flank : GAAAAAGACGAGATATTGGAAATAGGTGCGATCCGTATAGTCAATGGAAAAACAGTCGAAGAATATGAGCGGCTTATTGCTGTAAAAACTGAGATAGCGCAGAATATAAGTGAATTAACAGGCATTACGCAAGAGCAAGTAAAAGAGAATGGCAAGCCAATAAATGAGGTTTTGCCAAGTTTTATGGACTTTGTAAAAGGTAGTGAAGTAGTTGGTTACAATGTGAATTTTGACCATGATTTTCTACTAGCTGAGTGCAATCGACAGGGTATTGATATAACAAAGATAAAGTTTACAGATGTAATGACAATAGTCAAAAGCAAGCTCAAAGGTATGAGAAGCTATAAACTAGAGTCAGTTGCCAAAAGGCTCGGCATCACCACAAAACAGCAGCATCGAGCACTGTCGGATTGTTATTTGTTATATCAAGTCTATTGCAAACTGAATGAAAAATGATAGGTTTGTTGATAAAAAGCACGATTTTATGGGATCTTTTTAGT # Right flank : GACTAATACTTTTAGTACACTAATTAGGTGAGGTATCATTATGAATGAAAAAACAGAAATTATATATTGACGAACTGGCAGAAAGCCAAGGGGTAGCATTCTCAATGGCAGTTGAGCAAGGTTTTGACCTGTGTTCATTTGCAAATATGTTTATGCTATCAGATGCAAGGAACCATATGGACAACGGTTCTGCATACTGGATGACAATGACACCAGATATAATGATTGATAAGCTTAGTATGAACTCTGTAGACAAGGCTACTATGAACTACAGTAAAACAATGGCTGAGTGGCTTGGTGAATTTTATGCAAGATACCAGTACTATACAAATATACCAAGTTCAAAAATAGTAAAAATCATAACACCGGAATTTATATGTAAAAGGTACAATGTACTGCATGATTTAGATATGGGCGTTGCAGTTAAGAAGTTATCAAAATCATTTGATAAACAGATATAATCATATAAAAATAAGTAACTGGAGGTAGGTAATATGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATACGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTVV01000029.1 Ruminococcus sp. AM54-1NS AM54-1NS.Scaf29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 ................................ AAAGCAGATTGTTACAGTAAATGCCGACCCCGAAA 73 32 100.0 35 ................................ AACATCATTTGTGAGAGACGGAACCTTATTTGTAG 140 32 100.0 33 ................................ ACCGCTGAGCAACAGGAAACAGTGCTTAAACAG 205 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : CGTGTG # Right flank : TATGATAATGTAAAAAAAGAGAGGTATCATGCAATGATTAAATTATTTTTGAAAGAATACTTAGATGAAATGTCAACTGTATGTAGGGATAATAAGAATAATGTAAGTATCGCTGTAAATCCCGATTCTGAAAGGCAGGGACATCCTTATTTCAAATTTTATAATAACGTTTATTATGGAGATGCTGCTAAGGTGGTTAGAATTTTATTTAATTCAGCAGATTATGTTGAAAATAAAAATGCAGAAGACCAAAAGCTTTGGAAACTTTCGCATAAAGAAAAAAAGTTGCTTAAAGAACTTTTGAGTAGTCCTTCTGCAGAATATTCAGATATGACTATTTGGGAAGCTTGTAAATTTGAGTGGAACTTTGAATATTTAGAGCAATCTATTAACTTAAATAAATATGTAAATGGTGAATATGATAAGGATAAAACATTCACAGAAAATCCTGGCTATGTACCCTACAGTTTGGAAATGCCTGATTATTTAGAATTAAACTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 209-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTVV01000054.1 Ruminococcus sp. AM54-1NS AM54-1NS.Scaf54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 208 32 100.0 33 ................................ CCCCACAAAGTGGAAAGCCGTTTTGATATATTG 143 32 100.0 33 ................................ GTAGTAATTGCCGTCATGGTTCATTGCATAAAG 78 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================= ================== 3 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTGGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTTAGAAAAGTAGCCAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGAAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAATGAACAGTGAACAAAATCAAACCGATACCCATTAAATAAAACAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTGCTAAAGCTGTTTTATATCCTTTTTCAAATTCGGTCACGCTCCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //