Array 1 1050961-1049133 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ235913.1 [Clostridium] clostridioforme WAL-7855 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1050960 32 100.0 34 ................................ ATCAATCAACGAGTTTCACCTCCGCCCCGTCCAG 1050894 32 100.0 34 ................................ AACAGATATGAAAGAGGACTTCGTGGAACCTCTC 1050828 32 100.0 34 ................................ TTCAAAATCGCCAGTCCATTTACCCCTATGGAAA 1050762 32 100.0 33 ................................ TCCGCCTCTGCTATAAAACCTATCTTGTCAGGT 1050697 32 100.0 34 ................................ ATACGGTATCTCTCCGCTCTCGCACATCTCATGG 1050631 32 100.0 36 ................................ CACCTGGGCCGGGGCCATGGATGCAAGGTCCAGGAG 1050563 32 100.0 34 ................................ CGTCAAGTATGTCGGATGTGGGAAAACAGGCTAT 1050497 32 100.0 35 ................................ CCCCAGGCGGGTACCGCAATGGTATCCAGTCATGA 1050430 32 100.0 34 ................................ ACCCGAGATGTCCAGAAGGTTACTTTCCAGCCTT 1050364 32 100.0 35 ................................ ACAAACCTTAAGGTCACTGCTTACAACGCTTATGC 1050297 32 100.0 36 ................................ ATATCTTTCCCTTTCCGCCCTTCCGGGCAATAAAAT 1050229 32 100.0 35 ................................ AAGCGAGTGAATTAAGAACAGTAAAAGTGCGCAGA 1050162 32 100.0 34 ................................ ACAAAGATGACCACGCGCCTGCGGGATGGTGGAT 1050096 32 100.0 36 ................................ TACCTCTAACATCATAAAGGTAAGGGTGCCCAAACA 1050028 32 100.0 34 ................................ AAAGTAGTAGTAGACTTAGCATGTCCCAGGATAC 1049962 32 100.0 33 ................................ CCTACAAGGAGCGCATTATATACTCTTGCTTGA 1049897 32 100.0 34 ................................ TGTACTGAATAAGAGTAATACCCCCGCTTGCCAC 1049831 32 100.0 34 ................................ CTCGAACCGAAACGCCTTTAATGTCGCCGTCCCC 1049765 32 100.0 35 ................................ TCCACAATCTTGACAATAGTCTTGCCCCATCTCAA 1049698 32 100.0 33 ................................ TTGTGCAGTATTTCAATGCGGTGTTTCTGGTAA 1049633 32 100.0 35 ................................ GCTATTATCTTTTTTACCTCACTTTCGCTGATTTC 1049566 32 100.0 37 ................................ CCTTCCTGGCCGTCCTGCCCTTCCTTGCCTGCCTGCT 1049497 32 100.0 35 ................................ ATCATGCCGTTCGTGATTCCCACGCCCGCCGCCGT 1049430 32 100.0 34 ................................ CCTCACGTGCCCGTCCCCGGCCGTCTGGTACTGC 1049364 32 100.0 34 ................................ AGACCAGCAGACGGCCGATTTTATCAATTGTGTC 1049298 32 100.0 36 ................................ ATGGACATGTACCGGCTGGCCGTTGACTGGCTTATG 1049230 32 100.0 34 ................................ CGCAATCCGCAGTGCACCTCTGGCATCCGTAATC 1049164 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 28 32 100.0 35 GTCTCCACCCTCGTGGTGGAGTGGATTGAAAT # Left flank : TGCTGGTACTGATTACATATGATGTGAATACGGAAACCGCCGCAGGCAGGGCCAGGTTGAGAAAGGTTGCAAAGCAATGTGTCAATTATGGCACCCGCGTCCAGAACTCCGTATTTGAATGTATTTTGGATAATGCCCAGCTGATAAAGCTAAAGGCGATACTGACAGATATAATTGATGAACAGACGGACAGCCTTAGGTTTTACAACCTTGGGAATAAACACACTACAAAAGTGAACCATGTTGGGATGAATAAGGGGATTAATGTGGAAGAACCGCTGATATTCTGACCTGGCCGCGGGCGGTAAAGCGGTATAAAGTATTTTGGTGCGAACCTGAAGCAAACATGGATTTACGGGGAGATTCGCACCGGAAAATTTGCACAATGAGAACGGATTTGCGAGTGTGCAGGGATGGTTGGCCGTGATTTGAGGGGGTGGGATATGATTTGTTTGTGGAAATGTGTTGAAGAATAGTAGTGGTTATTGTGTAGTATTGCT # Right flank : TCCGGGGTAGTCTCATAGCCGTTCACATAATAGCGTCTCCGCTCTCGCGTCGGAGCAAGTTAAAAATCCGCCAATTACAGAATTACATCCAGTTGCCCACTCCTCTGCCCTTTTCGCAAACGCCGCAATCCCTTTTGAACTGCAAAAAAGGTTAGGTAAAACTAATTCCGTACAACAAAAAAGATGGGGCAAGCCCCATCCCTTCCATAATCTTGTTAGAATGTACAAAGAATGCATACTTCCATTATCCCTTCCATGCCCGAATCTCTTTAAGCCCCGGCACCAGCACCTTAGCGCTGGTTTCCAGAATGATCCGTCCCTTTTCAGCTGTGGCGCCTGAGGGGTCTCCGCCGATTCCGATGGGTTTGCCGTCTGCTGTTTTCCAATCCTCGGATACCCAGCCAATGGATACATTTCCGTAAGGTTTCAGCGCCTGATTGTCTTTAAATGCAGTGGGAATTCCTGCCTCTGAGGTCTCTGACTTTACCAGGGACGGGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCCTCGTGGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCACCCTCGTGGTGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 185800-184349 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ235920.1 [Clostridium] clostridioforme WAL-7855 supercont1.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 185799 33 100.0 34 ................................. AACAAGGCCCTGGCGGAAACGCCAACGACCTACC 185732 33 100.0 33 ................................. TTAACAATGTACTACTTCCAATTTCAAAATGGG 185666 33 100.0 37 ................................. TAATATTGCTATTGTGTAATTCTCAAAAAAATGCTAT 185596 33 100.0 35 ................................. GGACCAGCGCATCCATCTCAGGGTATCCTCTCCTC 185528 33 100.0 33 ................................. CCCCTCCATGGTCAGGGCTTCCAGGCGGATGTC 185462 33 100.0 34 ................................. TGGAGAAACAGTCGGAGTATATCTCCTGCGAGGG 185395 33 100.0 34 ................................. CTACAGGAACGCAGGAGCCGGCCATCCAGGAGGG 185328 33 100.0 34 ................................. ACTGCAACACTATCACAATGCCAAACTCCGACCA 185261 33 100.0 35 ................................. TGCAAAGGATGGAAAAATGCAAGAGGTTGCCGGAT 185193 33 100.0 33 ................................. CTAAAAATAGGTATAAAAAATACAGCTCCGCAA 185127 33 100.0 35 ................................. TGTGTTAGAAGATGCGAAAGTCTATGTTGGTTGGG 185059 33 100.0 35 ................................. TGTCCGGTAGACTTATATATATACTGCATGGGACT 184991 33 100.0 37 ................................. AAAGTTGGCCTGTATCTCAATCATAAATCGCTCCTGG 184921 33 100.0 34 ................................. TCCGTGATATTCGCAACCTCACTGGAATCCGGGG 184854 33 100.0 34 ................................. CTCGCTCCCAGGCTTAGCCTCGTAGCTGTACACC 184787 33 100.0 34 ................................. ATAGCCTGTGCCACCTTCCACCAGGGAAGGCCGT 184720 33 100.0 35 ................................. ACAATATGCAAACAAGGTAACGTTTTTTGATACCC 184652 33 100.0 35 ................................. CTGTTCTCATGGTTCTTTCCTTTCCGATTCTTGTT 184584 33 100.0 36 ................................. TGCCAAACTGACCAATTACCGGATTGAGCAGCTAGA 184515 33 100.0 34 ................................. TTTTTTAGTCCCTGGTGAGGAGCCCGGCTGGAAA 184448 33 100.0 34 ................................. ATCCCTCATTGCCTGGAACGCGTCTCTCGCCGTA 184381 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 22 33 100.0 35 GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT # Left flank : TGGAATTTCCGGAGAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAAGCGGGAAATCTGGCAGCTGTAATGGAACGCCAGGGCAGGGTATTGCGCATTTACGATGTCAATGATAAGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCTATATATCCGGAACAAAAGAGGCTTGTTTTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCACTGCAGCATGCGGGATATATGCGTGAAATGAAGGATTATGTAGTGTATAAGTAGAGTGTGATTTCTGTGAGGCGGAATCCCATCAAACCAGGTGCGAATGCCAAGCTAACATGAAATGTCCGGGAGATTCGCACCTGAAAAACAGAGGAAAAGCCGTGAAAATAGGCTGGGTGAATGGATGGAGGAGGTTGAAATAAGGGAGGGGGGGGGGGGACATAATGCATAAAAAGTTAGGGGGATGTGGAGGGATTGTTGGATAGTTTTGCT # Right flank : ATAACATGCTTTATATACATATGCTTTTCCTTTCCACCACTGCTGGATATGTGGTTTATTTTAGCTGGCCGATTTCGTGATAGGCCTCCAGAATACCATTTTTGGCTGCTTTTTATACAGTATCAATATCAACCCAATACCAACACTAACCCAATACCACCCCAATACTAACACCAATTCTTAATCATGCAGAACCATTAGGCAATTGCGAAACTCACTGACCAGAATTTATGCACATCGTATAGGAATGAATCTAAATTGAATATATTAAGCAAGATATTTTGTGCAAGGTGAATATAAAAATTCAGAGTTTCGCAATTACCTAATGCAGAACCATTTCTGAAAGGAGAGGGAAAAGCCATGAAACAGATGTCATTATTCGATGACAGAGAAGTATACAATCCCCTGGCCAGCAGGCTGCGTCCGGATGACCTGGATGGATTTGTGGGACAGGAGCATCTTTTGGGAAAGGGGAAGCTGCTGCGCCAGCTCATAGAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //