Array 1 2575298-2579886 **** Predicted by CRISPRDetect 2.4 *** >NC_013889.1 Thioalkalivibrio sp. K90mix, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2575298 28 100.0 32 ............................ TCTATAACTTTTGTGTGGAACTCCCTAACTGT 2575358 28 100.0 32 ............................ CTGAGATCAGCGTCCCTGAGATTAGCGCCCCC 2575418 28 100.0 32 ............................ TATACTTGGAGTTTTTCAACGATTACTCAACC 2575478 28 100.0 32 ............................ AGTACCAGCCAAAGTATTTTCTGCTGGAAAAT 2575538 28 100.0 32 ............................ ATGACTGACGAAGCTACTGAGATGCTCATTAA 2575598 28 100.0 32 ............................ CGATCGGCCGACCGTCGATTCGGGCGAGGAAC 2575658 28 100.0 32 ............................ TAATGGCTGGGCGACCGACAAAGTACAACGAA 2575718 28 100.0 32 ............................ ATCCGCGCGCGCAGCGCCAACCTGCGTGAGGG 2575778 28 100.0 32 ............................ TTGAAGATGGCCACCACGAACATGCCAATCGA 2575838 28 100.0 32 ............................ TGGATCAAATCAGGTTCCGTGAAGAGCTGACC 2575898 28 100.0 32 ............................ CCGTCTCCCCACGGGGCTTTTTTTCGTCTAGA 2575958 28 100.0 32 ............................ TGACCCGTACCGATGCGCAGATATTCGCGGGA 2576018 28 100.0 32 ............................ TCAGACGAGCGCTGCGGTCAGTGCGACCATGG 2576078 28 100.0 32 ............................ CCAGAGATTAGCGCCCCTGAGATTAGCGTCCC 2576138 28 100.0 32 ............................ AAACAGAGCCCCGGCAATCAACAGCACCACAC 2576198 28 100.0 32 ............................ ACACCGTCAGGCTGCTCCACTTGCATCTCCAG 2576258 28 100.0 32 ............................ TCACGGAGCTGGCGGACGCTCGCGCCGGTATC 2576318 28 100.0 32 ............................ TCAGGGGCAGCCGGTGCGGCAGGAGCCTCAGG 2576378 28 100.0 32 ............................ ACGAACAGACAAGCACCGTCCTGCGTGACCTC 2576438 28 100.0 32 ............................ ATGGGGGAGCCACTGTTGGCGCTGATAGCCTT 2576498 28 100.0 32 ............................ AATCGTCACGACCGAACATGCCACCGGGGTCA 2576558 28 100.0 32 ............................ GCACACCGTGGACATGCAGATGAACCCGGTGA 2576618 28 100.0 32 ............................ ACGGATGTCCGGGCCCTGGTCGACGTGCATGA 2576678 28 100.0 32 ............................ TACACGGCGCAGGAGCTCCTGGAGGACTGGGC 2576738 28 100.0 32 ............................ AGCTCCAGCTCAAAGCGATCCGCGATCTGCTC 2576798 28 100.0 32 ............................ TTGAGCCGTCTGCGCGAGCGGCTGCTGGAGCG 2576858 28 100.0 32 ............................ ACCCGCCCCGGTGACTACTGGTACCACATGGT 2576918 28 100.0 32 ............................ ACCATCACCGACAGCGACACCCGCGCCATCCC 2576978 28 100.0 32 ............................ ACCAGATCCGCCGTCTTCGAACGCCCGGACAC 2577038 28 100.0 32 ............................ TCATCCAGGCGCACCGCCTGGCCCGCCGTGGC 2577098 28 100.0 32 ............................ ACATCACCGGGCTCGACCTGGTGGGCGAGACG 2577158 28 100.0 32 ............................ GACCGCGACCGCTACACCGGCGTGATCGCCCA 2577218 28 100.0 32 ............................ CGAGGTGCGGGCAGACTGCGACACCGCCGAGG 2577278 28 100.0 32 ............................ ACCCAGGGGTCGCGGATGGGCACCGTATCCCC 2577338 28 100.0 32 ............................ GTCCGAGGCCGCCAGCTCCGGCGGCTCGCTGC 2577398 28 100.0 32 ............................ GATCCACCAGGTCCAGTACAACGCTCGCTTGC 2577458 28 100.0 32 ............................ ACCCCGCGACCGTGTACGTCACCCCGCGAGAG 2577518 28 100.0 32 ............................ AGCTCGTTCGGCAGCATCCCCGCCATGCGCTG 2577578 28 100.0 32 ............................ AGCATGGACATCATGCGCGAGGTGTCCGACTC 2577638 28 100.0 32 ............................ ACCTGATCCAGCCCGGAGCGCCGGCGCAGCTC 2577698 28 100.0 32 ............................ CCCTCGATTGCGGGCCGTTGGCGAGGCTGGCG 2577758 28 100.0 32 ............................ AGCCCTCGCACCACCTCGCCTCGCCTCCTCGC 2577818 28 100.0 32 ............................ TCTCCCAGTGGTGCAACGAGGCGCGCCGCGTT 2577878 28 100.0 32 ............................ ACCACATCGTTGCGCAACCCCAGGATGGTCCC 2577938 28 100.0 32 ............................ ACCCTGCGCCGGAGCGACGGCGACCAGCACCG 2577998 28 100.0 32 ............................ GATGCGCAGGGCGAAGGTGCCGCGCGGGCCTT 2578058 28 100.0 32 ............................ ACCGGAACAGACCCCGCGCGATCGTCCGATCC 2578118 28 100.0 32 ............................ CATCGCCCGACGAATCAGACCGAACACGACCA 2578178 28 100.0 32 ............................ TCGGGAAAGGTACAGCCGAAAACGTTATCCAG 2578238 28 100.0 32 ............................ GAATCCGCCAACGATTTCGGCGTCGGCGAAGC 2578298 28 100.0 32 ............................ ATCTCGAAGGCGACCACGGCGACGTTGCCCTG 2578358 28 100.0 33 ............................ GTTTTTTTCGGCGATCCGCTCATACCCCAAAAC 2578419 28 100.0 32 ............................ TTGAGCTCGACGGCCAGGCGGCCGTTGGTGGC 2578479 28 100.0 32 ............................ CACGTGAAAGCCGCCGATGCGGCGGGTAGTTT 2578539 28 100.0 32 ............................ AACCTGATCGGCACGGTCGAGAATGGCCAGAA 2578599 28 100.0 32 ............................ CTTCAGCTCAGCGGCAAGGCCCGACAAGACGA 2578659 28 96.4 32 ............C............... TGGGCGCCTCCCCTGTGCTTGCGCCCCCGACC 2578719 28 100.0 32 ............................ AATGGTGCAACGCGGCAGAACGACAGCAAGCG 2578779 28 100.0 32 ............................ TGCCACTGGTCGGGATCTAAACGCGACGCGAG 2578839 28 100.0 32 ............................ ATTGGCTCAGGACAGGCAGTGGGACACCTATC 2578899 28 100.0 32 ............................ AGGGTGCGCCGGCGCAGCATGGCCTTCAGGTG 2578959 28 100.0 32 ............................ CCCTCGATTGCGGGCCGCTGGCGCGGCTGGCG 2579019 28 100.0 32 ............................ TTCCGGCGTACCAGGACTACACCGCCCGCGCC 2579079 28 100.0 32 ............................ ATGATCGCGCGGGCCGACTCCGGTGATACCGA 2579139 28 100.0 32 ............................ TCGTCGCTGCGCTTGATCGCTTGATCGCTTCG 2579199 28 100.0 32 ............................ GAGGGGGATACGCTCACTGCGATCGCTCGCAC 2579259 28 100.0 32 ............................ AAGATTCATCGCGATCCGCGCTTTCCTACCGG 2579319 28 100.0 32 ............................ CGAGTTTGTGCGCTGGCTGTCGGAACAGATGC 2579379 28 100.0 32 ............................ AAGACCATGCTGGATTCCTGCAATGGACTGAT 2579439 28 100.0 32 ............................ AAGCCAGATCTGCGTGGCGCTGCTGCACGGGT 2579499 28 100.0 32 ............................ ACCTCGGTCACCACCTCGATGCCGAACGGATC 2579559 28 100.0 32 ............................ CGGATGCGCTCGCGCAGCTCCGGCAGTGAAGC 2579619 28 100.0 32 ............................ ATGTACGTCGACGCCAAGGGCGTGAGCTTCTT 2579679 28 100.0 32 ............................ ACCGACGCCCACCGCTCCGAAAGCAGCCTGTC 2579739 28 100.0 32 ............................ ACCAACGGGAACCCGCTGTTTCATTACGCCTT 2579799 28 100.0 32 ............................ TACGGTCGGCGGTTCGGTCCGGACCTGAAGCC 2579859 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 77 28 100.0 32 GTTAGCTGCCGCACAGGCAGCTCAGAAA # Left flank : GCGCCTGAACCTGCTCATGCAGGATGAATGGCTGGGCGGCATGCAAAGCTTGGTGGATGCCACCCCGGTACAACCTGTCCCCGACCAGGTCACCTATCGTCCCGTGCGGCGCCGTCAGTACAAAACCAATGCGGAGCGCCTGCGCCGACGGCGAATGCGCCGGCATGGAGAAAGTTACGAAGAAGCTCGGCAGCATATACCCGACACGGTCGAGCGGCGGGTCAACACCCCGTTCCTGAGCGTGCAAAGCGCCAGTACCGGACAACGCTTCAGCCTGTTCATCGAACACGGGCCGCCCCAGCAACACGCCTCGCCCGGCCGCTTCAACACTTACGGGCTAAGCCAGGACGCCACCGTTCCGTGGTTTTGACCCTTTTTCCGGGCGCACCCATGTTGCGCTCGGAAATCAGTGAGATACGCCATCCCTCCGGCAAAGGGTGAAAGCCGATCACTACGCAATAGTTCTTTAACAATCAGCGATATAGAATCAACATGCTCAA # Right flank : AGCCCAGGCCGCCCTTGGCCCCTACCTGCCGGAGTTAGCTGCCTGTGCGGCAGCTAACTGAGTGATGAATTATTGGGAAGGCCGCCTCGAGCTCGGCCTGTACCGCGCCAGACCCCGGAGCGCTCCCGCACACTAGAGAGCACTCCTGGCCAGGAGCTGGCTCTATCCCACCCAGATGGTCTTGGCGTTCTGGAATTCGCGGATGCCGAGTTCGGAGAGCTCGCGGCCGTAGCCCGAGTCCTTGACCCCGCCGAAGGGCAGACGCGGGTCGCTCTTGACGATGCCGTTGACGAAGGCGCAGCCGCACTCCAGGCGACGGGCCAGGGCCTCGCCGCGTACCGGATCGGCGGTCCAGACGCTGCCGCCCAGGCCGAAGCGCGAACGGTTGGCGAGGGTGATTGCGTGATCGGCGTTGCGCGCCCGGGTCACCGCGGCGACCGGACCGAAGGTCTCCTCGTCGAAGGCCGGCATGCCCGGCTCGACCGCATCCAGCAGTGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66903-67448 **** Predicted by CRISPRDetect 2.4 *** >NC_013930.1 Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 66903 36 100.0 36 .................................... CGGGGATGCGGCCGCGACCGCCGAGCTTCGGAGATG 66975 36 100.0 37 .................................... GCAAGCCGTCCTGGAGGAGGTTCGAGCAGTAGGGCCG 67048 36 100.0 36 .................................... CAAATCGGACGGGAGATCACTCATCTCCGTCTTGTC 67120 36 100.0 35 .................................... AGCGCCTACACCCGATTCTGGACACCGCGCTCGAC 67191 36 100.0 36 .................................... CTGGAGGGCGGCGATGAACGAGCCACGGACCCGGCG 67263 36 97.2 38 ....G............................... CACCGGATAGATCGCCGGGCCGCGCCCGGTCAGGCCTC 67337 36 97.2 38 ............C....................... CGTGTGATTGTGTATTGGCGAGCCCCGATCCGGGACTC A [67361] 67412 36 83.3 0 ............C...A.G.....T.......C..T | A [67430] ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 97.2 37 GTGGAAAGCACGTCCCTGTGGGGGCGTGGTTGGAAC # Left flank : CAAGGGGGCCGTCCTGGACCGGACCTACCGGCAGATCAGTGAGGTTTCGGCCTGGTGCATCGGGAACCGCGAGCGTATCGAGGAGCTTCTGGGGATGGTTAATGGCCTGGGATCTCTGCGGCGGCAGGGCTTCGGGCGAATCTCGGGGTGGGCCGTGGAGTCTGATCCAGAAGCTGAAAACCAGTGGAGCCAGCGTGCCCTGCCGAACAACCCCGGCGGGTTCCTGCGTTCGACCGGGGCCCTGTCTCCGCCCTACTGGCGACAGGATCGGGTTCAACCCATCTGGACACCAATGACGGATCAGCTCTGAAGTAGGTAAGTCCGCCGATGCCTTGCGAGCGCTCCGGTGGTGGTCTTAACCCCGGGGAGCGCTCGCGGGCGTTGCCGTGCGGGTTTCCGGGGCATCGAGGGAAAATCGATGGAACTCCTGGGCAACAGGGAGCGGACCACTCGCAAAACGGGCCTTCAGGCCTTGTCGGGGCGGGCTTGTGGAGCGGTCT # Right flank : TATGCACGGCCTGGGTCCGATGGAACAGGCAAGACCCTGGAAATCACCGGCTCTCAGAAGTTGGTGTCTGTAACGCAGCGGGCTGAACGAGGTCGTGGAAGACAGTTAGGATGGTAATCACGCTCGAGAGGGTATGGTTGCAGCGAACAAGGGACCGCCATCATTATCAGTGCTGACCCTCCGACCATTGGAATTCACGCCTGAATGTGGGCGTGGCAAGGATGCCGAAAAGTAAAGAAGGGAGGCGGTTATGTCGAGCGAGGAAACGCGAGAGAAGCAGCGAAAGGAAAACGAATCGAAGGGCGATCCGGCCGCTTCCCTGATGGCAAAGCAGATGCAGAGGATTGGGCGGGAGGATGAAGACCCCGACCTAGAAACAGCCTAACGGAAGCTCGAATCGATGTCTCGAGGGAACCCGGACGGGAAAGATGGGCCCGAAGGCGACTTAACGGGTAAGGACCCGGCCTGAAATCGGACCCAGACGATACTTCGCGATCGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAAGCACGTCCCTGTGGGGGCGTGGTTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //