Array 1 87-712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000269.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 87 29 100.0 39 ............................. CATAATATTAAACCTTCCATAAGTGCATATATATTTGTA 155 29 100.0 40 ............................. GTAATTGATTTAGAGTTTCTTCTGAAAGTTTATCTCCTGC 224 29 100.0 35 ............................. AAGGATAATGACAGTTTTCTTGTATTCGATATTAG 288 29 100.0 37 ............................. TTGAAATACTGAAGGAAGGGAAAAGCTATGCTAAACA 354 29 100.0 36 ............................. TCTGAATCTATAGATTGTACACTTTCTTTAAAATCC 419 29 100.0 37 ............................. AAGAAATAATGGAGTTAACTAAAAGTAATATAAATTG 485 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 551 29 100.0 38 ............................. GACTATTGGAATAACTTAGCGGCTCTGTATCAAGCTGA 618 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 684 29 93.1 0 .........T......C............ | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.3 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATAATATGTTATCTATAAATTTTATATGTTGTAATTCGACAAGTGCCTGGCACCAATTACTCATAGGAGAAATGAAGAAATGTTTTG # Right flank : TCATAGAAAAACCTCCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAATCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAAAAATGACCTGTCCTCGATGTTATAGCCATAACCTTTTTAGGTTTGGAAAGATCACTTTCTTACATTCCCATAGTAGCACATACATATATTCACGACCTTAATTCAATAATTAATTACTAAACATTTATTATAAGTATTATTGGTATTGTAACTTAAGAGATCATATAACAAAAGTATATATATTAATATATTGGTAAATAAAGGAGTGGTAATATGAGAAAAGTAACGAGTATATTAACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGAAGTGATATTCCAGTTAACATTCATCGCAATGAAGTTATATTTTTTATTATTCTTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 587-1799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000261.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 587 30 100.0 35 .............................. TAAAAGTTTAGATAAACATTTATAAGATATCGTGT 652 30 100.0 34 .............................. TAAATAACAAAACAGGTGCAATAGAGCTAAAAGC 716 30 100.0 36 .............................. AATGCTGATACTAGAAGCAATTTCGATGATGTTAGT 782 30 100.0 38 .............................. ATATTATAAGTTACACAAGAAGTTTTAAAAGTTCTTAA 850 30 100.0 35 .............................. TCTATTAAAATTAATGCATTTCTTACATCAACTAT 915 30 100.0 36 .............................. TACTCTTTGTAGCCATCTTTAAATTCAATTTCTATC 981 30 100.0 35 .............................. GATATTTTTCTTTTGTCCTCTCCTTCTACTCTAGT 1046 30 100.0 35 .............................. TATTGCGAATTTAATTCTTCTAAATTAGTCCCATT 1111 30 100.0 36 .............................. CCTGCCTAAAAATAGACAATAAAAAAAGAACTCTTG 1177 30 100.0 36 .............................. AGGCAGAAACATGAAAAAGGTAGGTAGCGTTTTAGA 1243 30 100.0 36 .............................. CCAAATTAAAACAACAGCATTTTTTATAACCTTGTT 1309 30 100.0 37 .............................. GAATCTACAAAATAGTGTGCCGAAGAATTTCTATTAC 1376 30 100.0 36 .............................. CCATAAAAAATCTTATATTCTATTCCCCAAGATTCT 1442 30 100.0 36 .............................. AAATTTCTAATATCTTCTTTCGTCTTTTCTTTAGCT 1508 30 100.0 36 .............................. TAGATATTACTTATTTTAGAAGGTTCAATTGATATA 1574 30 100.0 35 .............................. AGAGCTACAGAAGGATTAATGGGTAAGGTTAAAGG 1639 30 100.0 36 .............................. CAAGCTGGAGAAAGAGCTCTTGAAATATTGAAGCCT 1705 30 100.0 35 .............................. AGCTTTAGAATTCCATCCTTATCCTCAACATATTG 1770 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GTTCTAGATTTACATTCTAAAAAAATAATTGGCTACGCTTTCAATAAGAGAATGACTAATGATTTAGTTACCAAAGCCTTGAAAAATGCTTATTACAATCAATCTCCTGATAAAGATAAGCAACTAATATTCCATAGCGATTTAGGCTCTCAATATACTAGTAATGATTTAAAAGCACTATGCAAAGATTTTAATATTATACAATCATTTAGTAAAAAAGGTTGTCCCTATGACAATGCTTGCATAGAATCTTTCCATTCATCAATAAAAAAAGAAGAAATATATAGAAATACATACCGTACCTTCCAAGAAGCTAATAGAGCTATCTTTAAATATATTGAAGGTTGGTATAACAGAAAAAGACTACACTCCTCTATTAATTACATGACTCCAGATCAATGTGAATTATTAGCTAGAAGTGTAGCATAAAAAAGTTTGACTTTTCGTGTCCATGATATTGACATAAGACCATGTTGATATGACCGCATCTCCCGTTTCTA # Right flank : TCAGTTGAATTACTTCCCATATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATGTAAGAATTAGATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 193-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000319.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 192 30 83.3 36 AGACC......................... AATGTAAAAGGATATTGTTTTGCTAGTAATGCTTAT 126 30 100.0 34 .............................. AACATAAGGTTGTAATCTATTTCCATTTCATAAG 62 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 94.4 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATACTATCAAAAATGGTTGGTGTTATTTAGCTTCAGTTCTAGATTTACATTCTAAAAAAATAATTGGCTACGCTTTCAATAAGAGAATGACTAATGATTTAGTTACCAAAGCCTTGAAAAATGCTTATTACAATCAATCTCCTGATAAAGATAAGCAACTAATATTCCATAGCGATTTAGGCTCTCAATATACTAGTAATGATTTAAAAGCACTATGCAAAGATTTTAATATTATACAATCATTTAGTAAAAAAGGTTGTCCCTATGACAATGCTTGCATAGAATCTTTCCATTCATCAATAAAAAAAGAAGAAATATATAGAAATACATACCGTACCTTCCAAGAAGCTAATAGAGCTATCTTTAAATATATTGAAGGTTGGTATAACAGAAAAAGACTACACTCCTCTATTAATTACATGACTCCAGATCAATGTGAATTATTAGCTAGAAGTGTAGCATAAAAAAGTTTGACTTTTCGTGTCCATGATATTGACATA # Right flank : TGAAGCAAAAGATAATATGTTATCTATAAATTT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 51-2664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000231.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 51 29 72.4 37 CAACA.CC.A................... CTAAATATTTCTTTATCATCTAGCGTAACCCAAACTT 117 29 100.0 38 ............................. GTTTCTTTTATTAATTCTCTCAATTTATAATTTTCTGC 184 29 100.0 39 ............................. CTAATTTTAGAAATAGATTATACTCATTTTACTACACAT 252 29 100.0 37 ............................. TTTCTTTTAGTTCATCAACTTTCAGACTCTCTAAATT 318 29 100.0 36 ............................. ATATATACAAGGGTTAGAGATACTATAAAATTGTAT 383 29 100.0 36 ............................. ACATGACATGGGACAAGTTTTATAACTATGTTGTAG 448 29 100.0 37 ............................. TTTGTAAAGCTTGGACAGTAACATTCCCAACCATTCA 514 29 100.0 36 ............................. TTCTTTAATTGACCTAATACATTAGAATTTGTACTT 579 29 100.0 35 ............................. TTTGTTTACTCTCTATGTATTCTGTACCCTTATCT 643 29 100.0 36 ............................. AAGTAATTATCTAATTCTGCAAGAGATTTATCACTA 708 29 100.0 36 ............................. ATTTTATTCACACAATCTTCATATTGTGAAGCTATA 773 29 100.0 38 ............................. GCAGATGATGGAGATGACATACCATTTTAGGAGATAAG 840 29 100.0 38 ............................. ATGATAAAATGTTACATCATTTGAAAATTGATAGTTTG 907 29 100.0 35 ............................. TCTATTGAAATAATAGCTCTTTCTTTAATAACTTC 971 29 100.0 38 ............................. CTCTTTTAAAAGACACTTCTAAACTTTTAATCGCACCT 1038 29 100.0 38 ............................. TCGTGTCGATGCTGCCGAATTTGTCTCATAAACTCAAA 1105 29 100.0 39 ............................. TTGTATAGCATATATTGAAGCGGATAATCATAATATCTT 1173 29 100.0 37 ............................. AATTTAAAACAGTTAAAAAATACAAACCTATCTTTAT 1239 29 100.0 36 ............................. AAGTATTACTTTAGTCAATATGTAGTTTCAATTTAC 1304 29 100.0 39 ............................. TTAACTATACCTTTATACTTTTTACCACAACTTATATAT 1372 29 100.0 38 ............................. CTTGAATAAATGTTTGTTGGTAATAAAAATCCATTTTC 1439 29 100.0 38 ............................. CAGGAAGTTTCACGTTCAAGTTTAAACCGTTAGCGGGA 1506 29 100.0 37 ............................. TTTATAAATCTCTGTGCTTGTTTCAAAATCACTCTGT 1572 29 100.0 39 ............................. TAATATCCCGAAAAGTCAATACGCCCATTAGCGTTGCAA 1640 29 100.0 39 ............................. ATAGGTATCAGTGGATATGCTTTATTACAAGCAATATCA 1708 29 100.0 37 ............................. ATGCTGAATGCTTTTCCATACGCCACTCCAAAATCAT 1774 29 100.0 38 ............................. TTAATACATATATGTCACCATCTTTCAGTGCCACCTCA 1841 29 100.0 36 ............................. AACGCTATCAATATTCCCAATACAAAGAGTATCTCT 1906 29 100.0 39 ............................. GGTTTATTATATATTTATCTTTATTAATCATATATTTAG 1974 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 2041 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 2108 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 2177 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 2244 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 2309 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 2375 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 2440 29 100.0 37 ............................. ATTTTTGAGGCTATCCCATTTGTTCATTATGCTTCCA 2506 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 2572 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 2636 28 82.8 0 ................TA.G.-...G... | T [2660] ========== ====== ====== ====== ============================= ======================================== ================== 40 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTATATCACAAAGTGATGACTTATTTATTTTTTTGTATTTTTAATTATTC # Right flank : AATTAAAAATACAAAAAAATAAATAAGTCATCACTTTGTGATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 460-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000343.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 459 29 93.1 37 ......C..A................... GATTTTAGCAAACTAGGTAAAGTAAAAAGTGTTAATT CCA,AC,A [446,452,456] 387 29 100.0 35 ............................. TAACAATTCAGATAACTGTTTTTGAGTTAATCCAT 323 29 96.6 37 ..................A.......... TTTGATTACTTTAATACACTTATACATGGGATTACCC 257 29 100.0 37 ............................. AGCTTTGTACTTACTGTAATATTTGCTCCAAAACCGG 191 29 100.0 37 ............................. ATATAGCAAGTGCGGATTATCAAAAATTGATATATCA 125 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ACACATGCTCGCGCATAAATGCTTTTTAAGATTTGTAAAAATT # Right flank : TTAGCTTTGTCACTAGTTCTAAATGTTAATCTTTTTGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 774-1859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000259.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 774 30 100.0 36 .............................. TTATTTAGTTCAAGATCATTATTTAGTAGAGGAGGA 840 30 100.0 34 .............................. TTTTAAATAAGTTAATTAGTTCTTTATCAATATC 904 30 100.0 37 .............................. ATTTATAGAATTTGATGGAATTGCTCATTTGAAAACT 971 30 100.0 36 .............................. GGTGCAGTTGGAACTGGAATAGATTCGTTATCATCT 1037 30 100.0 36 .............................. TTACTAACTTCTAATGTAATCTTTTTCTCTGTTTGC 1103 30 100.0 38 .............................. CATATCTAAAATACTGTCTATTTCATTTAGTGCTTCAT 1171 30 100.0 36 .............................. AATTAGTGCAGAACAGTATAAAGAGTTGATGGCTAA 1237 30 100.0 36 .............................. TCTGTAAATTTAAATATTCCTAGAAGTTTTTGCCCT 1303 30 100.0 34 .............................. ATTCCTGTCCTGGATATATCATATTAGGATTTTT 1367 30 100.0 36 .............................. TGTAGCCGTAATAGCGGCTACAGAGATGATGGAATT 1433 30 100.0 35 .............................. TAGCAAAAACACAGTTAATAGATACGTGGAGGAAA 1498 30 100.0 35 .............................. ATTCTACTGGTTGTGGTGTATGTGCTAATATTTCT 1563 30 100.0 38 .............................. TTTGTTTATTATCCATATCTTCTCTTACACCTATAACA 1631 30 100.0 37 .............................. AAGTCTAAAGAAATAAATATAAGTAAAGAAACTTTAA 1698 30 100.0 36 .............................. TCTCCTTTAATGTCAAGTTTATAATATAAAAGAGAG 1764 30 100.0 36 .............................. AAAAGTAGATTACTAATGAAGGAACAACCAATTGTA 1830 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTCAATTATAATTATGCATTTTTATTTTATGATGTAAAAGAAAAAAGGGTAAATAAAGTATTTAAGGTTTGTAAAAAATATTTAACTCATTATCAAAGATCTGTTTTTAGAGGGGAGATAACACCTTCTAAAATAATAAAATTAAGAGAGGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAGTTATTGAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGGTATTGAAACTGCGGAGGATTTAATTTTATAAAATTATTTTACCAACCGATTAAAAAATTGAAACTATCCGTAACCCTTGATTTAACTGGTTTTGAGTGCGATTTTGGTTTGAAAAATTAAATTGTAAAAATTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATTTTAAGAGTATAATATAAATAAGGAATGGCTATTTTGCTATG # Right flank : GAAGCAAAAGATAATATGTTATCTATAAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1387-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000073.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1386 29 100.0 36 ............................. TTTGTTTCTTTTTAGCTTCTGCTTTAGCTTTTCTTT 1321 29 100.0 38 ............................. TAATAAGCCATTTCTCCGTTAGTTTGGACTTGGCTTAT 1254 29 100.0 36 ............................. GATAATTTAAAGTACAATGTATTAGCAATAAGAAAT 1189 29 100.0 36 ............................. TTCACCATACATCTTAATCTTCTCCTTTCATTTCCT 1124 29 100.0 35 ............................. CAAAAGCTAGAGAATGGGGAGCAAAAACGAAATTT 1060 29 100.0 36 ............................. TTGAATTTAAAGCTCCTTGTGATGGTAAAATAACAG 995 29 100.0 36 ............................. TCTCAAAACTAATTATAAAAATGATTATTATAATGT 930 29 100.0 37 ............................. ATACATTATTGGATTAATCAAACCAAAAATTCAATCA 864 29 100.0 38 ............................. TTAAAATTTGTATAGCTTCTTTGCCTGTTACGGCGTTC 797 29 100.0 34 ............................. TCTGTATTAAGTATGTATTTATTATTAACACCGC 734 29 100.0 37 ............................. ACTTTAATATTTTCTTAACCATTTTTTCTACTTGCTT 668 29 100.0 38 ............................. CCTTACAACTTGTATTAAGTGGTAAAAAAATAGTAAGT 601 29 100.0 36 ............................. ACAAAAAACAGACAATATTTAGCTGATAGAAAATTT 536 29 100.0 36 ............................. TAAAGTCATATGACATAACAAAATTTTTATTATCCA 471 29 100.0 38 ............................. AAATTTATTTGCATGTCTATCCTCCACAACTAAAATGG 404 29 100.0 40 ............................. CCAATTCGAAGGTATTTACATAAGAATGATACTGAAATAA 335 29 100.0 36 ............................. AAAATATTAGATTTGAAGATATAGATAGTGTATTAA 270 29 100.0 36 ............................. CTATCTTTTTCATTTTTTAGTGTTAAGCAATCATCT 205 29 100.0 36 ............................. TTCTTTTTTAATTGGATAAAAGGTAGAGAATTATTT 140 29 100.0 36 ............................. ACTTGTGCATATTAGAAAATCCAAGCATGGTTTTTC 75 28 82.8 0 ................TA.G.-...T... | G [50] ========== ====== ====== ====== ============================= ======================================== ================== 21 29 99.2 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGAAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TAACTAATTTTTACAAATCTTAAAAAGCATTTATGCGCGAGCATGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11209-10653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000098.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11208 30 100.0 35 .............................. TAGAAAACTTCTTTTTTGATAGGATTATAATACAT 11143 30 100.0 36 .............................. TTTTCACCCTCCTTTACATACCATTTTCCATTTATT 11077 30 100.0 35 .............................. TATGCCCTCCCAAATATTAAAATTTCTCTATTTAT 11012 30 100.0 36 .............................. TATCAAAAACGAACAGCTAGACGAAATTTCATGGAG 10946 30 100.0 35 .............................. GTATTAGGGTTAGAGTTATTATAGTGCTTTTTACT 10881 30 100.0 36 .............................. GAATCGTTAAATTTAACAGTATGTTGTATTATTTCA 10815 30 100.0 37 .............................. CCAAATAGAAAAAGAACATCAACAACAGATTAATACC 10748 30 100.0 36 .............................. AAATCTGCATTATGTGCTACTATAGGTAATTTACCT 10682 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GAGTAAAAAACTACACCCTTAAATGATCGGAAAATTTCATTATTATCTTGACGTTTATAACCAGCTTTAGAAGTAACAAGTAGACCTATTAAAT # Right flank : AGAAAGTAAGTAAATATTAATAGAAGTTGTTATAACAACTTCTATTATGAGAATAATTGTTATAAAAGACATGAATGATAGATGTTTTTGAAAAATATACTCAAAGTTACTCAAAAAATGACTAATATACTCAAGAATTTAAAACACCCCTATAAGTAAAAACTTATAGGGGTGTTTTAATTATCTGGAGTAATTAAATCTATATTGTGTTCTTGAAAAAACTTAACATATTCTTTAGGTGGAAGCCTATCTGTAATAAAACAAGTGATATCTTCCAAATTACAATAAGTTTTAAGAGAAGCTGTATCTAATTTTGAGTGATCAGCTAAAAGTATTACATTTGAACTATTTTCAACTACTGTTTTTTTTACATCATATTCAAAATTAGATGAATTAGTAACTCCTTTATCAATAGAGAAACCTGTAGTGGCCATAAATGCTTTCGATATATTATAATTTTTTAGGAAGTTTGAAGCTTCTACACCGATTAAAGAATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 46-1784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAH010000095.1 Clostridium botulinum D/C strain IZSVe-TV_10380_13_14 1394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46 30 90.0 35 T......C......T............... AGCTTCTAGTATGTATTGAACCACTTATACCTACT A,CT,CA [48,51,58] 116 30 100.0 35 .............................. AAATTTAAAAGAGAGTTTAGAGAATTAAAAAAACA 181 30 100.0 36 .............................. AAAATATAATAAATATGGTAATGTATCAATTTCAGG 247 30 100.0 37 .............................. TCAACTAATTTTCTAATTTCTTCTTTATTTATAGAAC 314 30 100.0 37 .............................. ACTTCGCCTATGATTGTTTCTGTTTTAGTTTGTATTT 381 30 100.0 36 .............................. GTCAGTTAAAAATATTGAAAAAAGAAATGACTTAAT 447 30 100.0 35 .............................. AAAAAGGAAGAACCTCACACAGGTTTAATATATAT 512 30 100.0 36 .............................. AGTAATTAAGTAACAAATATAGGATGTAAAATATAA 578 30 100.0 38 .............................. GTTATCTCCAGAAATATATGGTACTTATCAAGTAACGA 646 30 100.0 34 .............................. TAAATTGCATTAAGCTAACAGGAAGTACAGTACA 710 30 100.0 34 .............................. GAATAGAAGACGTAATTGAATACGTAGATATAGA 774 30 100.0 36 .............................. CTTTGCAGCAGAAACAGAAAAGAAGAATGAATACTT 840 30 100.0 36 .............................. AATTACCCAAAATTCACCACTACGTCTACCAAATTT 906 30 100.0 34 .............................. ATAAATTGGAAAGAAAACCAACGCTAGAAGAAGT 970 30 100.0 35 .............................. ATAAAAATATTAGAATAAAAATTTTAAAAAAACGT 1035 30 100.0 35 .............................. AATATTAAGCATGCTGATCTCTTACCATCTTTGGT 1100 30 100.0 36 .............................. TGTAAAAGCATTGCAAGATAAAGACATAAGAAACAT 1166 30 100.0 35 .............................. CATAGTCAGTATATTTGTAATGCTATTAGATTTTA 1231 30 100.0 36 .............................. CCACCCCCATTAAATTAATTTAATAGTAGCAAATTA 1297 30 100.0 35 .............................. TCATTTAATATTCAAAGTCAACGTTATGTAGATGG 1362 30 96.7 34 ..............T............... GGATTGAAAGAATAATTCAGTACCTGGATGAAAC 1426 30 100.0 35 .............................. GGACCTACAAACAAATTTAATTCAAGTGTAGAGAA 1491 30 100.0 36 .............................. TACAACTAACCGTATGCTAGTTGAGAATATGCAAGG 1557 30 100.0 36 .............................. AAACCAACAAATATCTGATATAAAAACATCTAATAA 1623 30 100.0 36 .............................. AATGGTATGTCATTATCATCAATAGGTTCTATATCT 1689 30 100.0 36 .............................. GAAAAGGCAAATGTTATTATAGGAAATTCCCATTAA 1755 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.5 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : TAACTAAATATTATTTTACTTAGTTCGACTCAATGTGTCCACTACT # Right flank : CCATAGGGAAATAGCCATTCCTTGTTTTTATTATACCCCTAAAGCTATTGAAAATAAACACTTTTATTATATTTTTCCCAACCGATTTTAGTAATGCCATTTTTGAAACTTAAACATATATCAAAACCAGTAAAATTAAGGATTATAGCTGGTTTTAATTTTTAAATCGGTTGGGAAAATAATTTACTTACTTTTGTATAAACAATAACCATAACCAAGAGAATTTTTTTCTAAAATTCCTACTGCCACAGCTATATTTGCCATGAATTGCGATATATCATCATCTTTAATTTCTATTTCAAATTTATTCCCCAATAGTTTGATTTGTTTGTATTTACATCCTATAGGCATTCTATTTTTTAATTTTATAGATTTTATCATATCATGTTCTAAAATTTCATCTATATCCTGAATAACTTTTATCTTCTTTATTAAATTCTCATTGATACTCTTTTTTAATAAATCTATATCCATTTTATTAGTCCAAGGCTCATTATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //