Array 1 272120-271820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSK010000001.1 Bartonella sp. M0283 NODE_1_length_2533476_cov_197.252052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 272119 36 97.2 30 A................................... GCACAACCGCTTGAAAGGCTATTCCGGCGG 272053 36 100.0 30 .................................... GCTGAAATCAGTTTTGATGAGGTTTTTAAT 271987 36 97.2 30 ....T............................... CATTGGCCGGTATCATCACTTTACATTTTT 271921 36 100.0 30 .................................... AGACCCTATTTGCACACGTGTCGATGAAAT 271855 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TGTCATCCACGTTTTCTCTAAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGCTTGGAACACCTTCTAAATTAGCATTTGCTAACAACGAGCAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCAGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAATAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATATAACAGAATAAGAGGAACAAATCAATGAATAACATAATTAAGTAAGTAAAGATTGAGTATATCGACGTTTTACCCGCGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGACATTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCAATACCCGCTTAAATGTTTAGGAACCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 273226-272727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSK010000001.1 Bartonella sp. M0283 NODE_1_length_2533476_cov_197.252052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 273225 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATAATGGCTTTCTTGACCATG 273159 36 88.9 30 C....A..C...T....................... CCGAACCGACAAGTGGCCTGATGCAAATAT 273093 36 100.0 30 .................................... CAACCCACCGGTCACCCCGTTGAGCTTGTC 273027 36 100.0 30 .................................... ATTAAGGGCGGCAAGGTTCGCGTTTTTATC 272961 36 100.0 31 .................................... CTTTTTTGGGGTCGGTTCCGGGGCGGCTTCA 272894 36 100.0 30 .................................... CGGAGGGCAGAAATACGAGCCAGATGAATG 272828 36 100.0 30 .................................... AGGCAGCAGCGAAAAAAGATGACCAACGAG 272762 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 96.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : AGCTTTAAAAAACCGGAAAGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAACCGGATGCATGTGACAAACAACCATTTTTGTCGGGCAAACAGCAATAGGCCGAAAAAACTCTGATGCGTTTTTTTTAAAATGCGCCTATGGCACCGCGCAAAAATGAACAAAACAGATTTGAAATGGTGAACGGAATTTTCCAAAAAATCAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGAATGGCCGCGCTTGACCGCTTGTTCCAATCTGATAGACTATTAGCTGTTAGTTTATTGACACTTTTA # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATCCACGTTTTCTCTAAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGCTTGGAACACCTTCTAAATTAGCATTTGCTAACAACGAGCAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCAGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAATAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 278435-277342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSK010000001.1 Bartonella sp. M0283 NODE_1_length_2533476_cov_197.252052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 278434 36 88.9 30 ACA..C.............................. CATGGATCGAGAGGCTTCAACCCTTGTTCA 278368 36 100.0 30 .................................... GTCTAGCGCGTCGTTTATTTGGGAAACAGT 278302 36 97.2 30 ...................................T GGCTTTTTTGTTATGGAGCTTTTTATACAT 278236 36 100.0 30 .................................... CGAAGCTGAAAACGTAGAGAAAGCGGCGGT 278170 36 100.0 30 .................................... ATTGTTGTCATTCTTGCCGCTACTTATGGC 278104 36 100.0 30 .................................... ATTGATAAACTTGTAAGCGAGAATATATTC 278038 36 100.0 30 .................................... AAATTTTCCGGTCGGCAATCTGTTTCATCG 277972 36 100.0 30 .................................... CATAACCTCTTCGCCCCGGACAGCGGCCGA 277906 35 97.2 30 .................-.................. CCACAGAGAACGCGTTGAGGGCGCGGGATA 277841 36 100.0 30 .................................... ACTTCACGCGACCAAACGTCTATTTGGACA 277775 36 97.2 30 ..............C..................... ATATCCCAAAAACAGCCCTTTTTGATCGCC 277709 36 97.2 30 ..............C..................... AACCTTCGATGTCAGCCCATGTCATTGTTA 277643 36 97.2 30 ..............C..................... ACTTTTATCAGTCAGGATTGTTGTGTCGTT 277577 36 97.2 31 .....A.............................. TTTATAGACGATATGTGCTTCCCCGCTTTTG 277510 36 100.0 30 .................................... CAGCAACATAACCGCCCGCGTCTTTTGAAT 277444 36 97.2 31 ...............T.................... CCACACCAGCAAACACCATTCAGATAATAAC 277377 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCCAAGGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTATTGATGGCGGGTTCCCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACTACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCATGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAACCCACCGCACAACATTGATGAAACCGAAACATATTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTCCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACGTGTCTTTCACGTTTTTCCTGAAAATCTAACAATATTTTTACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAGGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCGTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : GTTGCGGCTTGACCCCATTTTCTAATCTGTTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //