Array 1 280639-280428 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNFF01000006.1 Pseudoalteromonas neustonica strain SM1927 Pn_scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280638 29 100.0 32 ............................. TCATCGAGCTTACTTGTGCCGCCCGCTTCTTT 280577 29 93.1 32 .A...........C............... AAGAATTTAACATAGCGCAGCTTGAGCAAAAC 280516 29 96.6 32 .............C............... TACCAGAGGCTATCTGTTCTTTTTATGAAAAA 280455 28 86.2 0 ...................A-.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : CGGCCGTGTACTTCATTGGTGTTGGTGTTGTCA # Right flank : GTGAATTTAACTGGCTAAGATTTCACTTGCTGAAGTGATCATTTTGCGTTGCGGGTGACATTTCGCGCTAAAGCACGGCCTACAGTACAGGACATTTGGAGTATTGTTGAATTTATAAAGGGAGGGGTTAAGCAACATGTAATACTTTGATTTGTCGCGAGGTAAACTCGCTGCTACGAATACATGGCTCTAATGCTCTTCATCAAAGATTTGAATTTGATTGCGGCCTGATTTTTTTGCTACGTAGAGTGCGCTGTCGGCGGCGAGGATCATCATATCTGCGGTGGTGTATTTATCTGGTGTACAGCTGTAACATCCGATGCTGAGGGTGAGGTGGTCGGCGATGTTTGAATTTGGGTGCAGGATATTTAGTTGACTGATTTGCTGTTGCAGTAATTTGGCAAATTTTAAACAGTGGGTTTTATCAATGCTGGGTAACACAATTGCAAATTCTTCTCCGCCGTAGCGGGCTGCTAAATCACCTTGTCGCTTACATAAGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2261-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNFF01000003.1 Pseudoalteromonas neustonica strain SM1927 Pn_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2260 29 100.0 32 ............................. CCACCCCATACCGCAGTATCAACTTTTAATTT 2199 29 100.0 32 ............................. GTGCTTTCTGGCTGCTAATAAACGCCGCTAAA 2138 29 100.0 32 ............................. CTGATAGAGCAGAAGCGGCAGCAGATGCAGCG 2077 29 100.0 32 ............................. GTGTGCTAGATAATGGCACTAACACTGTACAG 2016 29 100.0 32 ............................. ATTTGACCGAGTTTGCGCAAAAGTTTTTTGAT 1955 29 100.0 32 ............................. AGTCCCACCCTAATATATATAGGCTTGAATAC 1894 29 100.0 32 ............................. TTTAATGCAGTACATAAAAGATGAATTTTATA 1833 29 100.0 32 ............................. TACTCAATGGACCCGCACCCACTACCCAAATA 1772 29 100.0 32 ............................. CTTTATTCTTTGCAGTTGTGATTTGTGCGTTA 1711 29 100.0 32 ............................. ATGACTCTGTAGTTGGTGGTTGGTGGGATTAC 1650 29 100.0 32 ............................. TACTCAATGGATCCGCATCCGCTACCAAAATA 1589 29 100.0 32 ............................. GGCAGATTCTTATCATTTAGAGAGCGCCGATT 1528 29 100.0 32 ............................. TTGATTACACACGCTACGCAATATTAGAGCCA 1467 29 100.0 32 ............................. TAAAATTAAATTCAAAAATAGCGAATAGAAAA 1406 29 100.0 32 ............................. ATGAAGCAGAGCATTTGCTTGCGGCTGATCTT 1345 29 100.0 32 ............................. CATGGAATGCAGCAAAGAAATTAGCTGGCATT 1284 29 100.0 32 ............................. AGATTTCAGCCGCGGGAGAGACTAACTCGTCA 1223 29 100.0 32 ............................. CCAATGCAAAACGTGCTGCAGCAATTACGGTA 1162 29 100.0 32 ............................. CTGAGGATGCCGCGTTTTTGCCCACAATTTCA 1101 29 100.0 32 ............................. TAAAATTAAATTCAAAAACAGCGAATAGAAAA 1040 29 100.0 32 ............................. TGCTATGAACCGCGATCTACTGCTACCAGAAG 979 29 100.0 32 ............................. CTGTTTTTGGCTACTATAGAGACGCACAAATT 918 29 100.0 32 ............................. TGTGAGATTCTATAGTGTGAAAAAGAACATTG 857 29 100.0 32 ............................. AGTGCAAATAATAACAACTCTAGCTTAGACAT 796 29 100.0 32 ............................. AGTGCAAATAATAACAACTCTAGCTTAGACAT 735 29 100.0 32 ............................. CGCTTCGTCTAACTCCATCCACTTCTTACGCA 674 29 100.0 32 ............................. TACACAAACCGAAACCAGCATTATAACAATAT 613 29 100.0 32 ............................. TTATTGAGTCTCGCCGTTACAGTGAAGCAGGC 552 29 100.0 32 ............................. CAGGCCGCATCACTCGTTCAATGTCAGGTCAA 491 29 100.0 33 ............................. GTTACAACGCGCAGCATAATGGTCGTACAACGC 429 29 100.0 32 ............................. TCGTTGCTTGGTGGATTTATTAACTTCATTTT 368 29 96.6 32 .....T....................... AGTATAAAATCAGTCCGACTTTTCAGAATATA 307 29 100.0 32 ............................. CAGCTTTGGTTTAGTGCGTTAGCTATGACAAG 246 29 100.0 32 ............................. TTGTTACTGGGTTTCGAGCTGTAACAATACAA 185 29 100.0 32 ............................. TAGGCTCGAAATAAATCGAGCATACTTTGCAT 124 29 100.0 32 ............................. TACTTTAGAATTTCAGAGGATGGAACGGGAGT 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.9 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : ATTAAGCGCTGGTGAGATCACGCCACCTAAACCATATGAAGATGCCCAACCGCCAGCACTACCAGAGCCTGAATCTATTGGCGATGACGGGCATCGCACTAATTAGGAGTAGATCATGAGTATGTGTGTTGTTGTAACTGAAGCTGTACCACCCAGATTAAGAGGGCGATTAGCTGTATGGTTACTAGAAATTCGCGCAGGTGTATACGTTGGTGATGTAGGTCGAAAGATTAGAGAAATGATTTGGTTTCAAGTCTCTGAGTTGGCAGAACAAGGAAATGTGGTTATGGCGTGGGCTACAAATACTGAATCGGGTTTTGATTTTATTACTTATGGTAAAAATGCACGGATGCCTATAGATTTAGAAGGATTAAGGCTGGTCAAGTTTACACCAGTAAACAACGAAACATTAAGCTAAAAATAACTGTTACGCTCTTTAAAAATTTGGTAGATTTGAACTAGCTGTTTTTATTTATAAAAAACAAGCATATACTATTAGA # Right flank : GTTAACGGAGAGGAGGTTTGGAGAGGTACTGGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //