Array 1 1987-279 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNNP01000126.1 Vibrio parahaemolyticus strain B6_4 B6_4_contig126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1986 28 100.0 32 ............................ ATAATCAATATTTGCTTAAGTCGCTTATTGAA 1926 28 100.0 32 ............................ TTGGTGCGGGCGCGGTGGGTGTTCCTCTTACC 1866 28 100.0 32 ............................ ATTCCTAAAGGTATCAACTACGTTGATTTGCC 1806 28 100.0 32 ............................ ATTGAGGGCGGTTGGTACATTGAAGCCAAAGA 1746 28 100.0 31 ............................ ATATACCAGTCATTAGACACAGCCTGTGCGA 1687 28 100.0 32 ............................ TAGTGAACAGGGTGTTATGGCTCGTGATAAGA 1627 28 100.0 32 ............................ TATCGTAGTCGGCACTTTCTATAACCTCTTCA 1567 28 100.0 32 ............................ AACAACGTTTTCATTGCGTCTGCCATCCCCAT 1507 28 100.0 32 ............................ AAGTGGTGTGACACTTGCTATTACCAAAATGA 1447 28 100.0 32 ............................ GAATCAGACTCATCAGAGGCAGGTGCCTTTTC 1387 28 100.0 32 ............................ TATGAAACACTAGGCGGCGCTAATGAAGTTGT 1327 28 100.0 32 ............................ GCAAAGCCTTTGCTGAAGAAGCAGCAGATAAA 1267 28 100.0 32 ............................ ATCCAGTACCATTATTACAAACTACGTTTTCT 1207 28 100.0 32 ............................ ATCACGATTGCTTTCTATTGGTTGGCTGACCG 1147 28 100.0 32 ............................ CGTTAACTGTTTCAGATCCAATTTGACCATCT 1087 28 100.0 32 ............................ GTCTTGCGTTTAAGTCCGATGACATCACACTA 1027 28 100.0 32 ............................ ATCCAATCCGTATTTTTTGCGTAACATTTCCA 967 28 100.0 32 ............................ ATCCAATCCGTATTTTTTGCGTAACATTTCCA 907 28 100.0 32 ............................ AGCATATTCGCTCAAATCTGGCATTTGCCTTC 847 28 100.0 32 ............................ ATCAAATAAAAGCCCGTTTGTATTGAGCCATT 787 28 100.0 32 ............................ ATCAAATAAAAGCCCGTTTGTATTGAGCCATT 727 28 100.0 32 ............................ TGACCAATCTCTGGCGAGAATCCAACTTTAAT 667 28 100.0 33 ............................ GCTATCTTAAACAATGGAGGTGGTTGTTTGATT 606 28 100.0 32 ............................ AAATAAAGTGGCAGATACCAGCTCAGTTTGCC 546 28 100.0 32 ............................ GTATGTAAATGGCTGCGCTACAAGACAGATAT 486 28 100.0 32 ............................ ATAATAAGAAGATCGCAACCTTCTAACGATTT 426 28 100.0 32 ............................ ATACTCAGGCTTCTGGCCAGAAGCGAAAACCA 366 28 100.0 32 ............................ AAGAACGCTTAGAACGACGTTTAGACATTTTT 306 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : CGAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGACTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTTAAAATAGGCTTAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTAT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATATTATTCTCATAATATTCAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATATTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATCGCTTGGAAAAATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //