Array 1 762776-765431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039543.1 Desulfovibrio marinus strain CS1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 762776 29 100.0 32 ............................. GGGCTGGCGTTGCTGGGCTACTCCAGGGACCT 762837 29 100.0 32 ............................. ACAACAACAAATGCCTCGACTGGGCGAAGGAG 762898 29 100.0 32 ............................. GCGATGCCGTCACCCATAGTCGCGTTGGCGGT 762959 29 100.0 33 ............................. TTGCTTGGTATACTTCTCCAGCGCCTCACTCCC 763021 29 100.0 32 ............................. GCGATGCCGTCACCCATAGTCGCGTTGGCGGT 763082 29 100.0 32 ............................. GCGGGAATCCTGGGACGCGGCGTAGCGGACCT 763143 29 100.0 32 ............................. GTGGTTTTGGACGCGGGGTGCCTTAATGTTTT 763204 29 100.0 32 ............................. CACAACTTGTTCAGGCGCTTCTGTGGATTGCA 763265 29 100.0 32 ............................. TGTGATCTGGATTTTTCGCGCCTTCTTCGGGT 763326 29 100.0 32 ............................. ACGACGGGACAATGGAGCAATGGGCGAAGAAT 763387 29 100.0 32 ............................. GTCGAGTTTATGGATGGAACCACGGCGGCCAC 763448 29 100.0 33 ............................. TCTCTGGATTGGGAACCCAACGCCGCTCTCCCC 763510 29 100.0 32 ............................. CTGCAGGGAGGTGGTGAATCATGAGCGCCATC 763571 29 100.0 32 ............................. ATGTGGCGTCCAGCACGCTGGACACGCTTCTC 763632 29 100.0 32 ............................. AGCTGGCCTGATGACGTCCAACCCCGTTGATC 763693 29 100.0 32 ............................. CATGCGCAGTGCTGCCCGATGGGGTGAGCCAT 763754 29 100.0 32 ............................. CTCCGGAGCAGTGTACACCACGTGAGGTTTGT 763815 29 100.0 32 ............................. TGCAGCTCCAGCTCGTCAACGTGCGCAACATC 763876 29 100.0 32 ............................. GGTGGATTTACAGCAATGGCTGGGTATTGCCG 763937 29 100.0 32 ............................. GCCGCCGTCAGATTTCCATGCGCGGGCGCGTT 763998 29 100.0 32 ............................. GCGATCACCAGTTCGACGCCCACCCTGCCCTC 764059 29 100.0 32 ............................. TCTCCGACCAGCCGTTATCTGGGCACCGCGAT 764120 29 100.0 32 ............................. ACGGCGAAGATGCCGCCGGCGGCCAAGGGAGC 764181 29 100.0 33 ............................. CCCTATACCTTGTAAATGCTGTACATTCATCGC 764243 29 100.0 32 ............................. TTCATCGTCACCGTCGGCAACATCGCGCACGT 764304 29 100.0 32 ............................. GTTTGGATGTTTGAGTCCGTCGAGGACATGAA 764365 29 100.0 32 ............................. CAAAATATCGAAATCATTGCATCGTCATTGCA 764426 29 100.0 32 ............................. TTCGTTCATAGCCCCACCGCGGCCAGCTGCCA 764487 29 100.0 32 ............................. TCGCGTTGGTCAGTAGCGGCTACACATTCAAT 764548 29 100.0 32 ............................. ATGGAAATATTGTACGAAATCGAGTCATGGCA 764609 29 100.0 32 ............................. CCGCACGGCTTGGCGTCAACCGCACCGTGCTG 764670 29 100.0 32 ............................. GAAATACGCCGCCAACTCGCGCACGCGGTACA 764731 29 100.0 32 ............................. CTCGGAGTGGTCTCCTTGCCAGTTCGCATCCA 764792 29 100.0 32 ............................. AGCCGGCCGAAATTGTCCCGGCCCCGGCAGTC 764853 29 96.6 32 ..............C.............. GATTATCCTTCCTTCCCCAACCTGCCACGACT 764914 29 96.6 32 ..............C.............. CGATCATGCCAATAACGCCCGGCGCCATAGCC 764975 29 96.6 32 ..............C.............. CGCCGGTGCCCATGTTCGATTGGGAATCCTTT 765036 29 96.6 32 ..............C.............. ACGCTCCAGGACCTGGGCGGCTCGCGGGAGTT 765097 29 96.6 32 ..............C.............. ACGCTCCAGGACCTGGGCGGCTCGCGGGAGTT 765158 29 96.6 32 ..............C.............. TAGTGAGCATACCCAGTAGATTTAGAGTTTGC 765219 29 96.6 32 ..............C.............. CTCTGCACGTTTTTCCCGGCCGATTTCTACGA 765280 29 96.6 33 ..............C.............. CGTATGGCCGGCGAGGTGGTTTTCTCCGGCAGT 765342 29 96.6 32 ..............C.............. ACCTCCGGGCAGCGCCTCGGCAAACTTGATAA 765403 29 93.1 0 ..............C..........T... | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.1 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : ATCATCCCGGTCATCGAAGAAGTCCTGGCCGCTGGCGACAAGGAGCCCCCGCCCCCCTATGAGGATGCGGTGGGGCCGGCGTTCCGGGACGAGGAGGGCATAGGCGATGATGGTCATCGTTCTTGAAAACGCGCCGCCCCGGCTTCGCGGACGTCTTGCGGTGTGGCTGCTGGAAATCCGCGCCGGCGTGTTCGTGGGAAACTATTCGCAAAAGGTCCGCGATATGATCTGGGGCCAGGTGGCGGACAACCTGGAAGAAGGCAACGCCGTGATGGCCTGGGCCAGCCGAGAGGAGGGGGGCTTTTCCTTCGAGACGCTTGGGGAAAATCGTCGCATCCCCTGCGAGATGGATGGTGTGCGCTTGGTGAGCTTCCTGCCTCTTCCTGGTGAAGATGAGCAAGGCGGGCAGGAAGAACGCCAGGCAGATAACGACTGATTGATTCTGGTACGTTGATTCTGTTCCTTGAAAGGTGAATAGTGAAGGTGTATTGGACGTAAGA # Right flank : GCGAATGGATTATTCGGTGATGTGTAAAAGATTATAAGTCTATCGTGACTACCAAAGATTGATTTTATCCCAAAGTGACGACTGCATTGACTGGCAAGGCCTGCGCGGCTATTTCGCGTTCCTTGCCTCCTCGGGGTCAATCCATCACTAGACTATAAAGCTATCGCGTCTACCAGTCTCAGGTCTCTCAGGGAAACCGTTCCTTTCTTTCAACCCAGTCGTTTTGGATACGGCCTATCCTCGTATTTCCCCAGCTTGTCCCGTCCACGCTTAAAGGCATGAGCTTCCTCCAGGTGGTGATCGACCAGCAACTCCACTGCTGATTCGAGCATCTCCCCCAGTTGGCGCAGGACGCGACCACGGCTTCGCGGGTAGACGTGCATCTCCTCGACCACGACTTGCGTAGACTGTCCGAGGTTGCCACGGCGTTGCACCTCACGTTCCCAACGCTTGTGTGAGCCTGAGGCCATGCGGTGGACGATCTTGGCGGCCTGGACGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3545791-3541872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039543.1 Desulfovibrio marinus strain CS1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3545790 32 100.0 39 ................................ GGTTTCGTCGGGGCACGTTATCGTCGCAGCGTCTAATCG 3545719 32 100.0 35 ................................ GAACTGTCCGAGATTAAAACAGAGAAGGGCCAAGG 3545652 32 100.0 33 ................................ CTGCGAAATGCTGGTGCCGGAAATCGAGCCGCC 3545587 32 100.0 33 ................................ TACAAGGTCCCCAGAGCCAACCCAGCGGAGCGC 3545522 32 100.0 34 ................................ GACCTGCTAGATGTAGACCCGTGGGATGAACAGC 3545456 32 100.0 34 ................................ CTTCTCGTTGAGGTAGTATGAAAACAGGTCAACG 3545390 32 100.0 34 ................................ CTGACCGGCATCACATCCACGCTGGGCGTTCGCG 3545324 32 100.0 34 ................................ TTCCGCGTCATCCCATATGGCAACGACAGGAAAG 3545258 32 100.0 34 ................................ ACGGCGGGTGCAGCCCGGGGACGCCTAAGGGGGC 3545192 32 100.0 35 ................................ AAAGAAAGCCACGGTCGCAAAATGGCGCAGCCAGC 3545125 32 100.0 34 ................................ TGGCCCGCGCCCGGGTCCATCAATTCGAGCTCCG 3545059 32 100.0 34 ................................ CACGCCGCTCACGCTGGCGCTCGCGCTGGAGGTG 3544993 32 100.0 34 ................................ CGCGCCGCAGCGCTCGGTCCGGCTGCAGCCGCCC 3544927 32 100.0 34 ................................ CTGCCGCAATGCACCGTGGCCAGATCCTCGCCGG 3544861 32 100.0 34 ................................ TCCCGGTCCAGCCGGGCCTGGATCAGGACCTCCT 3544795 32 100.0 33 ................................ GCCGACAATGCGCGCGCTGAGCCGGCCGGAGCC 3544730 32 100.0 34 ................................ ACCCTCGTGTTGATTGTCAGAGTATGGAGACGGT 3544664 32 100.0 33 ................................ AGAACCCGCGCCACGCTATCCGTGCTCACACCA 3544599 32 100.0 33 ................................ GACCCGGCGCCGCATGACATCGATGGAGTTGTT 3544534 32 100.0 35 ................................ ACGGGCAGCAGGGCATGAACCTCATTGCTTGCGAA 3544467 32 100.0 32 ................................ GTGCCACGCCATCGCGGGCATGGGCGAGGACG 3544403 32 100.0 33 ................................ ACGGCCGGCGCGCCGTGGTGCGATTCGGCCGGC 3544338 32 100.0 35 ................................ CACCGCAAGCACGCCATCATCATGGCCCTGGCCCG 3544271 32 100.0 35 ................................ AGCGAGGGCATGCAGTGGAAAGACCGGCGCGAGAT 3544204 32 100.0 34 ................................ CTTGACGGATCAACAACCGAGGAGGGGCGATGTC 3544138 32 100.0 33 ................................ ACGCCTACCGAAGAAGGGCAGCAAATCGAGTGG 3544073 32 100.0 34 ................................ ATCATCGAGTGCAAGGAGGCTTTGGAGAAGAAAA 3544007 32 100.0 33 ................................ AAACTTCTTGGCTTGGCGTTCACGCGCAAGCTC 3543942 32 100.0 33 ................................ ACGCCTACCGAAGAAGGGCAGCAAATCGAGTGG 3543877 32 100.0 35 ................................ AAAAACTGCATCGTCAAGCTGTATGGTGATGCGTC 3543810 32 100.0 34 ................................ ATGGTGTTCGCCAACATTTCCAGCGGTCCCGGTG 3543744 32 100.0 34 ................................ TGGGTCTCACTGCCCGCTACAACGATCCCAGCGC 3543678 32 100.0 36 ................................ AAGCGAGGATGATATGGCCTTGACACCGCAGCAGAT 3543610 32 100.0 34 ................................ GGATCGTGGGGGGATGATCTACCATGAAAGTCAT 3543544 32 100.0 34 ................................ CCCTCCATCAGCCGGCCACGTCGGGGTGGTTGCG 3543478 32 100.0 32 ................................ CCAACGCTGCAACATCTTCGCATATGCGGCCA 3543414 32 100.0 34 ................................ AATGTCCGTCCGCATGCGCTTCTCAAACCGACGC 3543348 32 100.0 32 ................................ TGGCGGCATATCCGCGCAAAGCGCTTTGGATG 3543284 32 100.0 34 ................................ TTCATCAAGTCGCTCAATGACGGCGCCGGCATCA 3543218 32 100.0 34 ................................ TCCATGAAGTAGTCGAGGCCGATGTTGCGGAAAA 3543152 32 100.0 32 ................................ TGGCGGCATATCCGCGCAAAGCGCTTTGGATG 3543088 32 100.0 34 ................................ CCTGCGATTGGTCCGCCTGTTCAGGAATGTGGGT 3543022 32 100.0 35 ................................ TTGTTAAGTCGCTCAATGACGGCGCCGGCATCATC 3542955 32 100.0 32 ................................ GTCCCTTGTCACCCGCCAGGATATCACTTCCG 3542891 32 100.0 34 ................................ TGGATTGTGACCGAGAGCACGCCCGGTGCTGGCG 3542825 32 100.0 36 ................................ TGCCTAGTTGTCGGAGACGCGCCAGGGAAATGGGAT 3542757 32 100.0 35 ................................ CGAACGAATCGACGTCATATCCACCACCTATGCGC 3542690 32 100.0 34 ................................ GCGAACGTTTTGACCAGCAGGAGCTTGGCCGCTC 3542624 32 100.0 33 ................................ ATCCATGGAGCGTCCGGCCAAAATTTTGGTCAG 3542559 32 100.0 32 ................................ CTGTGAATCCAGCGGGTTACGTCTAGTGTGGG 3542495 32 100.0 33 ................................ ATCGCGGCTGATCAGGCGGCAAGGCACGCCGTG 3542430 32 100.0 35 ................................ AAAGAGGTGGCGTTGCACAAGTCCGCGCACACCAC 3542363 32 100.0 33 ................................ TCGATATTGCCGAGGAGGGCATATTGTCTGCGG 3542298 32 100.0 34 ................................ TCGCTACGAATGTCATGACCTTGCAGGACTACGC 3542232 32 100.0 34 ................................ AGGATGCGCGTAAGGAAAGACTCTGGAGGCAGAA 3542166 32 100.0 37 ................................ CAAATCGCGGAGCCTGGGAAGCAGAACGAAGCATGGA 3542097 32 100.0 32 ................................ CGCTTGATCTCGCGCATGTCGATCTCGCGCCA 3542033 32 100.0 33 ................................ ATACTCGGGCTCGTGAGGCGCACCGATATCGGG 3541968 31 96.9 33 ...........-.................... GTTGAACCCCGGCCGAGGCCGTGTCTCACCCCA 3541904 32 90.6 0 .....................T..GG...... | T [3541893] ========== ====== ====== ====== ================================ ======================================= ================== 60 32 99.8 34 GTCGCTCCCCCCGCGGGAGCGCGGATTGAAAC # Left flank : CTCATGCTCGTATCATACGACGTCGCGACCTCCGACGAGGGCGGGCCCAAGCGGTTGCGGCAGGTGGCGAAGCTCTGCGGCGACTACGGCCAGCGCGTGCAGTACTCCGTGTTCGAGTGCGACGTGGACCCGGCGCAATGGACAACGCTGCGCGCCTCGCTGCTGGATGTCATCAACCCGGACAAGGACAGCCTCAGATTCTACAACCTGGGGCGGGAGTGGAAACGCCGCGTGGAGCATGTGGGCGTGCGGGAGCCGCCGCAGCTGGACGAGCCGCTGATCGTTTGAGCGCAGGGGCGTTGCTGCCGCGGCCCTGGGTGTTTGCGCGAACAGGAGGTGTCCGCAGAATTGCCGGGTCAGTCGCGCCTTGGAAATACGCATTGAAAACAGACTGTTGTGAAATTACGTTCTGTGACAACCACATAGCGAAAGCAGAAAAAGAAGAAGTTCGCGGAATTGCCGTTGCCATATGAGGACTGGCACGGGATAAGAAAGGAAGC # Right flank : AACGTAAAGCAGGCTGCTTTGGAGTGGGTGGCCGCCGGCGGCTTTGACCATCCGTGGATGGGCCACCGCCTACCTGGAAATGGTCCTGCGCCGGAGGCCAAGACCACTTACACCGAGGCCAAAGCAGCCTCCGGAATCAGGAAAAGACTCCTGGTTCCGGCGTGGAAATAGAAAAGATCACGCCACCTTTGGCTCTGAAGCACTTCGACAAGCAATGCGATCAACAATCCAGGCGGGCGCCGCGAATAATGACCGCAAGACACTTGCCACGGCCAAGGGACGGGGGGATGAGGCTTGATGCACAAAAAAAGGGTTACCCTTTCGGATAACCCTGTGATTTTCTTTTGGCGTCCCCAAGGGGATTTGAACCCCTGTTGCCGGCGTGAGAGGCCGGAGTCCTGGGCCACTAGACGATGGGGACGCGGCGTTGTGGAATCCGTCTTGTATGCGTAGTGCGCGTTGCCGTCAACCTATTTTCTACATGCCGGGGCGATTTTTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGAGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //