Array 1 946-76 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMH010000030.1 Providencia rettgeri strain 2020EL-00104 NODE_30_length_27211_cov_21.637314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 945 28 100.0 32 ............................ AATACCGAGGCGTTAGCTGCCGATGTGATTAT 885 28 100.0 32 ............................ ATATACTCAGTAACCGAAGTAGGGTGGTTTCT 825 28 100.0 32 ............................ ATTTAGCTGCACGAATATTTAACGGCACACCG 765 28 100.0 33 ............................ AGCTCGAGAGTTGGCCGTTATATAGATCGTTGT 704 28 100.0 32 ............................ ATCCGATAAGAGAATAAAGTACACACCCAATA 644 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 584 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 524 28 100.0 32 ............................ TCCGGCAATACTGTGTGATACCTATCGCAACC 464 28 100.0 32 ............................ ATACCCTGTAAATATTGCATATTGGATAAACG 404 28 100.0 32 ............................ ATATCAAAATCCAGTGGTGGGATGATGATATC 344 28 100.0 32 ............................ GAAGATTTAATTTCCCTTGGCAATATCAATCA 284 28 100.0 32 ............................ ACTTTCGGATTAAGCTGTCGTGCTTTTTCCAT 224 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 164 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 104 28 89.3 0 ...T......A.........T....... | G [78] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10693-9583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMH010000030.1 Providencia rettgeri strain 2020EL-00104 NODE_30_length_27211_cov_21.637314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10692 28 100.0 32 ............................ TCATATTCGACCACTCAGGATCAGTTCACTTA 10632 28 100.0 33 ............................ TGATTCTGAGCTAGTGAAACAACCGGCGTTTGA 10571 28 100.0 32 ............................ TAGACGGTCACGGGCAAGCCTCGCTTGATCGA 10511 28 100.0 32 ............................ AGCCAAGCCCCTTGGCGACTTGCTGAATGGGA 10451 28 100.0 32 ............................ TGAGTAAGCAAATCATCACGATAATCATAGAA 10391 28 100.0 32 ............................ TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 10331 28 100.0 32 ............................ GTAGGCATGTAAGCCGACATACATTTGCTTAA 10271 28 100.0 32 ............................ AGATGAAATGTCATTCACCTATAATAGTCCTT 10211 28 100.0 32 ............................ AGTTCCGTCACATATTAAAGAAGGCAAATATA 10151 28 100.0 33 ............................ ACTTGGCTGCTTCTAAATCTTCCAGTGTTCCCC 10090 28 100.0 32 ............................ ATATTGAGCAAATCCACCTCAAACGTTTCTTT 10030 28 100.0 32 ............................ CGCAGAAGTTGAAGTAATAACGCAAGTATATT 9970 28 100.0 32 ............................ GCAGGAAGGCAAGCCTAGCAATAACGCAATAC 9910 28 100.0 32 ............................ GAGAGGGGCAATCATTACCTGAATCGCTTTGT 9850 28 100.0 32 ............................ GTTAACGATAATCATAACGTCACTATGTATCT 9790 28 100.0 32 ............................ ATTTATCGACAAAGTGAATGATTATATTAATG 9730 28 100.0 32 ............................ CATCAACGGGGTTCATATCTTCAAAAGCACGC 9670 28 100.0 32 ............................ ACAAGGTGTTTATGAGGCAGTCGCAACAAACT 9610 28 89.3 0 ............A.........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGGACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAACACCCTCCCAAAACAAAGGTATTTTGGTGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //