Array 1 28650-27765 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWRR01000002.1 Staphylococcus intermedius strain 14S03299-1 NODE_2_length_897243_cov_78.3361_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28649 36 100.0 29 .................................... CTTTCCATTGTCTTTTTAGCTTCACCAGT 28584 36 100.0 30 .................................... TTCTGAAAGAACGTATAAGTGCGCCCTTAC 28518 36 100.0 29 .................................... CCTCCACAAACCTATGATTAGGTCTAGGA 28453 36 100.0 30 .................................... ACCTAAAGGGAACATAGGCGCTAAAAATAT 28387 36 100.0 29 .................................... CTAAGCGAATGGTTTACAATGAGCGCGGA 28322 36 100.0 30 .................................... TGCAACTGACAGGCGCAGGCTGTCGAGAAA 28256 36 100.0 30 .................................... AATTATATGAACAACAAAAACAAGTCACTG 28190 36 100.0 29 .................................... TCTTTATTGTCGCTATGGTTTATGCACTT 28125 36 100.0 29 .................................... ATTTTCACCTTTACCCCATGCAGATTCAC 28060 36 100.0 29 .................................... TTTGGTACAACTAATGTAAATGAAATTGG 27995 36 100.0 29 .................................... TGAATTTTATAGCTTTTCTATTAGGTAAA 27930 36 100.0 29 .................................... GGAATTTGATTATGGAGAAGGAGATGAGT 27865 36 100.0 30 .................................... TTTAGTAGAAGTAAACGAAGCATATACGTC 27799 35 86.1 0 .......................T...T.-.G.C.. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.0 29 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TCACTCAACAAAAGAAAACATTTTGATTGTATTATTTCCGGAGTCTCACCTCGGTATTCACGATATTAAAGTATTTATGCAACTTTTAAAGAAGTATCGTTTCACAACGATCGTCTTCACCAATCATCCTTCTATCATCATAAATGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGCGTGTCATGACATAGAAAAAATAAAGGAAGAATTATCGTTATTAATTCCAGAAGAAATGGTAAGTCATCAATTGACTAATATGATTGCATATCACGAATTTTTAGGTGAAAACCTTTCTGAGTTTGAAAGATATTTTAAGTTTATAAACCATTACAATTAAGTTATACTTAATTCAATGATTGACAAGTAAGTAATGACTATGTGACTTACTTTGCGATTGAGTTGGGTAAGACGATTCCTCGTTTTTTATGTTTTACTACTTCTAATAGTGTGAAGCCTCAATTCTCTCCAGAATACAGTTAAGAATTTTGAGATTTGAG # Right flank : CCCACTTTTAAATCAATTACGAACTATATTTACTGCCCTCACTATCTTTTAACTTCAATATAAAGGTATGGAGGGGCATTTTTATTTACGCGAAATGTCCACCAACGTCCCTTTTCCATCTCCATGTTATAATAGCCACAAATGCTCATTAAAACTCAAAAGAAGGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTATCCGAGGGACAACAGTTTGAAAAGGTCGCACGTGATATACCTACACCAGAGGGACACGATGTTTTGGTAAAAGTCCATGTGACAGGGGTGAACCCGGTCGATACGAAAACGCGTCAAGCGCCTCTCAATGCGAAGGAACGTGTACTTGGCTATGATGCAGCAGGCGTAGTCGAAGCGGTTGGTGATGAAGTTACGGATTTCAAACCAGGTGACCGTGTGTACTATTCCGGCTCCAATCAACGTGATGGTTCCAATCAAACGTATCAGCTCGTAAATGAAAATTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 668535-667485 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWRR01000002.1 Staphylococcus intermedius strain 14S03299-1 NODE_2_length_897243_cov_78.3361_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 668534 36 94.4 36 ...........A.....A.................. GGGACGTCCTAACAATTATTGAAAATTACCACGGCA 668462 36 97.2 36 ...........A........................ TATTTTTCTCCTTTAGCAATCATTCTGTCTAGTACC 668390 36 100.0 34 .................................... TTTTATACTGTTTTACCAGTTTTTCATTTTCAGT 668320 36 100.0 35 .................................... CCACATTTTTCAGTAACAACGATGTCACAACTTTT 668249 36 100.0 37 .................................... AATAATGTTGTGTGTAACTCTTCAATGTCTGATTGGG 668176 36 100.0 39 .................................... ATTCTATCGTCAAATTCCTTTTGAATCGTTAGTAATTCT 668101 36 100.0 36 .................................... CTTGGTATTTCACAAATTGTAACGCTTTAATACGCA 668029 36 97.2 35 ...........A........................ GTTTATCTGCATTGATCCATGTGTAAATTAATTTA 667958 36 97.2 37 ................T................... ATTCCTCCAAATTTTCACTGTGATTTTTTGATGTTGC 667885 36 94.4 37 ....T...G........................... CTGCGCAATCTCGTTAATATATTTATAGTTTTTATCT 667812 36 94.4 37 ....T...G........................... CCAAACCATTTAGCACGATATTTATTAAAACCATATA 667739 36 97.2 38 ....T............................... CGCTATATTCTTTGAAAGGCTCGAGGCTGTAAAGTGTT 667665 36 91.7 37 ............C.T....T................ TCATAAAAGTTTAATTCTGTATTCGTATTTTGTATCA 667592 36 91.7 35 ............C.T....T................ GGCAGTGTGAGATTTTATATTTGCGCAACAACTCC 667521 36 77.8 0 ..G..........................ACTTTTA | A [667489] ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 95.5 36 AATCGAATAGAGACCCCGACATAAGGGGACGAGAAC # Left flank : GTGGCAGCTTCAAATCAATACAGATGTTTCACGTGAAAACTAATGGTTGATACAGTCAAATTGGGTGTTGTAGTAAGTAAAGTAAGGTAGGGGAATTTTAGTAAAATAGCTACATTCGAATCTACTAATTATTAAAATATAGAGAAAAATAGTAAGCCGAAAAAATAATTAAAGTTTGTACTGTTATAACAATTACTAAATGGATGTGATTATAAAAGCAGCGAGTTGATATACAAAGAAACATGGGAAGAATTTCATAATCGTCTTAGGGGAGTGCTGGGTTAGGATTCTTCAATAAAAAGTATGGATGGAATATGATATGAATTGTTGATTGTTTATTGTATAATATCGATGATGTAATTTGAGTTATTTATAGTTGGCTAAAATTAAAATGTCTAAAAATTGGACAATAAGGGGCGATTTAATGTTTAGTTTGTCTCAATTCAAGGCAAGGTAAAAACGCTGTTATTCCCGCTATCAAGGTGTTTTCAAAGCTGACC # Right flank : TCATTTAAAATATTAAAAAGTGCTTTTAAAGAGAAGTTATGGTGTGTAGTATATTGAAAAATAAAAAGAATATTGAAGGTGAGTTACAAGGTTTAAAAAATAACAAAAAATTCTAAATTCTATTGTTGTAAACAAAGGAATGTTGTAAAATTTAATTAACAATTTATGCGATAAAATGGGTGCGTATACATTTGTATGCATGTATTTATAAACATAATTTTTAATCATATCTATTTAAAATGTATACGTTAGCTATTAAATGAAGGTTTTGAAGAAATAGTAGACGGCATAAAAGGTATTAAAATGGAATTGAAGTAATCACTCACTGAACATTGTTCTTGTTTTTAAATAGGAGGTGTAATGGTGAAAGATATCATTTACGTTGAAAATCATCATTTTGTCAGTGTAAAAGGAGAAAGTATCAAATTTAAGAATATTATAGATAAAACAGAACGATATTTTTTATTAGATGATGTTGAAGCGCTGATATTTGATAGTCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //