Array 1 182876-184224 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBR01000012.1 Pseudomonas aeruginosa strain JYH21 IPC1232_12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182876 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 182936 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 182996 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 183056 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 183116 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 183176 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 183236 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 183296 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 183356 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 183416 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 183476 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 183536 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 183596 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 183656 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 183716 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 183776 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 183836 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 183896 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 183956 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 184016 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 184076 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 184136 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 184197 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 194744-193099 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBR01000012.1 Pseudomonas aeruginosa strain JYH21 IPC1232_12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 194743 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 194683 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 194623 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 194563 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 194503 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 194443 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 194383 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 194323 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 194263 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 194203 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 194143 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 194083 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 194022 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 193962 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 193902 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 193842 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 193782 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 193722 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 193662 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 193602 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 193546 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 193486 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 193426 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 193366 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 193306 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 193246 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 193186 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 193126 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATAGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACACCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 208218-207589 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBR01000001.1 Pseudomonas aeruginosa strain JYH21 IPC1232_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 208217 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 208157 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 208097 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 208037 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 207976 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 207916 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 207856 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 207796 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 207736 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 207676 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 207616 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //