Array 1 8903-9707 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRS01000318.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST452 ST452-Typhimurium_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8903 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8964 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9025 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9086 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9147 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9209 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9312 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9373 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9434 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9495 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9556 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9617 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9678 29 96.6 0 A............................ | A [9704] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5620-7600 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRS01000487.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST452 ST452-Typhimurium_contig_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5620 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5681 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5742 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5803 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 5864 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 5925 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 5986 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 6047 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 6108 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 6169 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 6230 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 6291 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 6352 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 6413 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 6474 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6535 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6596 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6657 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6718 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6779 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6840 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6901 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6962 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7023 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7085 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7146 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7207 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7268 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7329 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7390 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7451 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7512 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7573 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //