Array 1 12121-10933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTH01000022.1 Anoxybacillus thermarum strain AF/04 contig000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =========================================== ================== 12120 38 97.4 38 .................................G.... TTTGTGGAAGAGCTCCGTTTGACGGAGCTTCTTCACAT 12044 38 97.4 39 .................................G.... AATGATTGCAGCGATGATTAAAAAGATTTTTTTTGTTTT 11967 38 97.4 43 .....................................T TTTTTCTCTCCCTTTCTTTTTTCTTTTTTTTGTTTTTTTTTGT 11886 38 100.0 39 ...................................... AGTTGTCCCATCCGTTGTTTTCATAATGTTCCAACACGA 11809 38 100.0 38 ...................................... CCTTCTAGTCTCATCCAATCGGATGATGTGAATGAAAC 11733 38 100.0 39 ...................................... TGTGTTCCCTTGCGGAACACAACGGTTCCGCAAATGAAA 11656 38 100.0 36 ...................................... ATTCGATCAAGCGGCATTGTTGCCAGCTCGATCTTT 11582 38 100.0 37 ...................................... ACAAATAATGTTCTGCGAAGGGCGATCCTGTTTTCCC 11507 38 100.0 39 ...................................... TTCCTCCGTTCTTTTTATTTTTTCCTTTTCTGTTTTTAT 11430 38 100.0 39 ...................................... CAATAATCATTGAACTGTGTGTTTCCGACAGTTCAATGC 11353 38 100.0 38 ...................................... ACACATATAAGTTACGAGTTACTTGATCGAGGTAGTCC 11277 38 100.0 38 ...................................... CAAGTATTTGTTTTTCTTTCACACAAGGGAAAAACATC 11201 38 100.0 39 ...................................... TTTCCGGGTTCTGCTGGGCAAAAGACACTAACAGAGGAT 11124 38 100.0 38 ...................................... TTGAATTTTCCGTCAGAGTTTTTTTGAGGGAAAAAAGC 11048 38 100.0 40 ...................................... ATTATTAACTTGCTTTAAAGCGGCAACGGTTGTGTTAAAA 10970 38 89.5 0 ................................G..CGC | ========== ====== ====== ====== ====================================== =========================================== ================== 16 38 98.9 39 GAGAAAATGAAACGGGCCTCGTGTAGAGGATTAACACA # Left flank : GGATGGGCGGAAGCGCATTTTGTTTCCCTAGATTCGCATAGGTTTGCACATCGATCTCTAAGTCATACAACTGAATCACGATCTCGTCCTCCCCCTCCGAAACAATTCACTAAAAATTTAGCATACTGTTTCAGAAAAGGGGAGGGGGACATTCCAAAGGAATTTACAAAAAAAGAAAGCGTTTCGGGGATAAAATGATAATTTACATAATTGAAAAAAGAAGGGGGTGTGACACGGGCATTGCAACTGTATGAAACATTAAAACTTTAGTTGTGAGTATATGCACGCCTTCAAAAAGTAAAAAAAGATAAGGGGGTGTACAATGTCTCACATGCAAGAAAATGAGAGAGGAATTGTTGAACATGAGCAACTTGACTGCTTGAATAAAATAGTCGATCATTTAAGTTTACATAACGTAAATATTGAAATTCGAGCTAGAATCAACTTGTACAAAAACAGGCCTTGATTTCTTACAGATACAACGCTAGAATGAGGATGGA # Right flank : CTTTCATACAAGGGCGGTTTTTTTGTTACATAAATGTTAATGCATTTGACAATGAAAATGTATTCGAAAAAACTTTTTAAAATATTTTGCATAAGAAAGAAGGAATTTGTATTTTTTTGTAGAATAGTGCGATATTCCTAATGAGAGGTGAAAAATGAAGATGAGTCAACCGAGTGTATTTTTTGATCATCGTCTTTTTTACGAAGCATGGGACAGATTAGTGAGAACGACAACTGATGCGGCGGGAGTAGATGGAGTACGAATAGACGAAGTTACTGTGCCAAATGAGTGGGTTGAATCTGTACAAACAAAACTTCTTTCTAATTCGTACAAACCTTCCCCTGTGAAAGAAGTACAAATTAAGAAAAATGGAAAATCAAGAACAATTGGTATTTTGACAGTAGAAGATCGTTATGTCCATATGCTAGTGAAATGTTGGCTTGAACCGTTATGTCTTCCGAAATTCAGCAAGTACAGTTTTGCTTATCAACCTAAAAAAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAAAATGAAACGGGCCTCGTGTAGAGGATTAACACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9869-9435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTH01000033.1 Anoxybacillus thermarum strain AF/04 contig000033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9868 30 100.0 36 .............................. CATCTCCGATTGTGTTCTTTCTATATTCCTTCAAGG 9802 30 100.0 36 .............................. TTTCCCCCTTTGTGGTATTCTATAATTGGGCAAAGG 9736 30 100.0 37 .............................. TAAACCGACGTATGGTTCTTTTATGTTAGTAGGATTA 9669 30 100.0 37 .............................. TAAACCGACGTATGGTTCTTTTATGTTAGTAGGATTA 9602 30 100.0 38 .............................. TATCGAATTTGTTGTATAGTTTGTTTCGGTTTTCTAAT 9534 30 100.0 40 .............................. TAATACTTGGAATCGTTTTACACCGATAATTTGACCGTCA 9464 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TCCTAAGCGATGTGACGGCAACAACGATTCCATCGCAATCGGTTGATCACGGGCTGATGGCGTTTGTTTTGCATGAAGTAGCCGATCGGGAAGCGGTGTTTGCGGAAATCGCCCGCATCATGAAACCGAACGGTGCGTTTCTATTGATTGATTGGGAAGCGGTTGAAAGTGACATGGGTCCACCGATTCATGAGCGCATTCCGTCGCAACAACTGATGGATGAGGCGAAAGCGGCATTTGCACATGTCGAGCTCGTTCATTTTCACCCGAGCGTGTATGGTGTCATGATCGCAACAACGAAATCAAATAATTTTGTTCAATGATTCACAACCGTCGTCGACCTCCAATCTTGCAAAAATCCCGGGGGATCGACGACAATTTAATTTTTGTCACTTTTTCAGACGCATCAAGCGATAAAGACTATTGACTGAATTTTCGAACTGATGTACAATGACGTTGTATAGCTTTTCCATGTGTTGATATATCAACACTTTTTAGGG # Right flank : ATGGCGAATAGTGCCTTGGCACTGTTCGTTTTTTTATTTTAACAAGCGACAAGCCTTTGACACATACAGTAATAAAAGAGCATGCGATGAAGGGGGCTGAGGTGTGAACATTTTAGTCATTTGGCGGTTGTTGACGGTTGGCGGGGTGAATGCGGGTTGGCGCAATCGGGCGTTGTATTTTAAAAAGCATGGCATCACAACCGATTTTTTATATACGAAAGATCTTGGCGGCATGCATATGATGGAAGACGTCGCAAATGTCTACGTTATGAAAAAGAAAAGCGACATATACGATTTATTGCGAAAACGATATGATGCGATCATCGTCGTCGATACGAGCCAAGCGTACGATTGGTTAAGCGATGTCGGGTATCGCGGACCGATCATTGTCGAGGCGCGCACACCGGAATTGTTGAAATTGAAACGAAATTTACAAGGGATTGAAAAAATTCCACCGCGTCAATTTATCGTTCCGTCTTTTTATCAAAAACGTCTTCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 13932-13698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTH01000033.1 Anoxybacillus thermarum strain AF/04 contig000033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13931 30 100.0 40 .............................. ACTAACTTCCATGTCCTTCCCAGCAAATGATGTGCTTATG 13861 30 100.0 35 .............................. GTCGATGCGATGTTCTAATTGAATTTCCCACATTT 13796 30 100.0 34 .............................. TGTCTTTGGTCTGACGAGAGCTTCCACTTATGCG 13732 30 86.7 0 .......C.A.........AA......... | G,G,ACG [13701,13703,13706] ========== ====== ====== ====== ============================== ======================================== ================== 4 30 96.7 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AAGAGGTTTTATGGAGGAAACAACTTATATCATCATATACCTCGATTGTTTGTTTCAGCGGACTTCTTTTTTATTCTTCTTCCTTTAATCCCGAGCGAACTTTTTTATCGTGTTGTTGGCAGTCGGGATAGTTATTCTCAATTATTACGACATTAAAATTCCTCCAAATGGAAGTGGAACATCATTTCATTCTTCGCTACATTTAGCAGTGCTCATTGTATTGGGAATGAAACATGTTTTGCTCAATCGGAACAAGGAACGACGTTTGTCATTCGCCTTCCGATTCACTGATAAAAACAGCATGCTTATGGATTTGTTCATCATTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCTCGGGGGATCGACGACAATTTGATTTTTGTCACTTTTTCAGACGCATCAAGCGATAAAGACCATTGACTGAATTTTCGGATGGTTGTATAATGAAACTGTATACATTTTCCATGTGTTGATATATCAACACTTTTTAGG # Right flank : AACCTTCTTTTGGACAAGTGATGTATTTTACTTTTTATTCAAAATTTGATATAATTATTAAAGCAGGGAACATCTTTCTTTCCGATTTCGGTAAAGCGAGATGTTTTTTTTTCATGGGGATATTGATTTCACAACGAAATGGAGGGATTTCTTGTGAAGAAATACGCCATTGTATATTGTGAAAATCAATTTGGTTCCATGGATGGAAAAACAGCGAATGGACTTGTGCGCGATTCTGGACTGTATGAAATCGTGGCGGTTATTGATTCGACAAAAGCTGGTCAAGATGCGGGAGAAGTGCTTGATCAAAAGAAAAATGGCATTCCGATTTGTAAAAACCTTCAAGATGCAATGGCCTCCGCAAAAGAAAAACCGAACTACTTCATCTTAGGAATTGCTCCAGCGAACGCTTTTCTCAAAAAAGAAGAACGACAAGTCGTGATCGAAGCGATGGAAGCAGGCATGCATATCATTAACCCACTTCAAGAGTTTTTAACAGA # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //