Array 1 106763-105574 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZU01000014.1 Streptomyces vitaminophilus strain ATCC 31673 Contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106762 29 100.0 32 ............................. GTCAAAGGCAAGAGCGTGAACCCCTCCCATTC 106701 29 100.0 32 ............................. GCCCGGCAATCAGCGCCTCAAGGAAAGCCAAT 106640 29 100.0 32 ............................. TCCGGGGTTGATCCGACCGAGGTGGCTCGTCG 106579 29 100.0 32 ............................. CTAATCCGTACGCGAATAATCCATCTGAATAC 106518 29 100.0 32 ............................. ATTATCAGGAGTCAGAGAGGGGATGTGGGCAG 106457 29 100.0 32 ............................. GCCATGGCGTCGTGGCGTCAGCCCCGGTATCG 106396 29 100.0 32 ............................. TCCCACCGAGATCACACTGCCTGCCACTGGCG 106335 29 100.0 32 ............................. TCCTCATCCTGACACCCGACGAAAAGATCGAG 106274 29 100.0 32 ............................. AGCAACGCGGCCGGCCGCTGCAGCGGCACCCA 106213 29 100.0 32 ............................. ATGAATAAGGAATCGAACGAGATGACAGGAGG 106152 29 100.0 32 ............................. GCGGCCGGGCCTCGGCAGGGATCAGGACGTAG 106091 29 100.0 32 ............................. GGCAACGTTGTGGACAACGACGGACGCGTGGC 106030 29 100.0 33 ............................. GCGTTGGCCACCTCAACCGGCTGTTCAACCTCC 105968 29 100.0 31 ............................. CATTGGCCCCACGGGGCAGTTATCACTACAC 105908 29 100.0 32 ............................. ACCTCGAGGGGGATCATGATGGCTCGTACGGT 105847 29 100.0 32 ............................. GGGGCGTAAACCACACAGGCGGGCGTACCGAA 105786 29 100.0 32 ............................. ACCCCGCCGTGGAGTCAGCGCAGCAACATGCA 105725 29 100.0 32 ............................. GGTAGGTGGTGGTCCTGGAGAGGAACCAGCGT 105664 29 100.0 32 ............................. CCTGTCGAGGGTGGAGGGCCTGAAAGAGGGAC 105603 29 86.2 0 ...G.............C...T..C.... | C [105588] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GCTGGACGCACTTCCCTTCGACCTGGTGTGGGCGACAACGTGGGAGGAAGAAGCAAACATCTTCGTCGCGCCAGTCCTGGGATTACCCGAGTTGCCTTTCATTCCCTGGCCCTCGCCGCGGCCCGAGCCCGGGGGCGGTGTGTTCTGGAAGACACCTGAGATCGTCGCGTGGGCGAAAGGCCGTCCGTTCGCCTGGATCGATGATGAGATCACCGAGGCGGACCGTACCTGGGTGCGCGAATACCACGATGGTCCCGCCCTACTGCACTGGGTCGACCCGCGATGTGGCCTTGCCATCGACGACTTTGCGGCGTTGACGGCATGGGCGACTGGTCTTGACTGACTCCGCAGCCGGTCGGCAACTGGCTGCGATACCGTCCTGCTTGATGGTTACGGGACCGCTTCCAGGTGTCGCGTTCTGGGAGAAAGGCGAAATGTCCGTCTCTCGGGAAGTGGGTAAGAACGACGCTCCTCGCCGGAAAACCCGCAGGTCAGCTAGC # Right flank : CGTTCCCCGGCGGACGGGGTGGCGTGGAAACGCGACGGGGCCGGTCCGGGTACCCGGACCGGCCCCGTCGGGGGTGGCTCAGTGGCTGGGCTTGAAGCCGCGTAGCCGGAGGCTGTTGCTCACCACGAACACGGAGGAGAAGGCCATCGCCGCTCCTGCGATCATCGGGTTGAGGAGCCCGGCCGCGGCCAGTGGCAGGGCCGCGACGTTGTAGGCGAAGGCCCAGAACAGGTTGGACCTGATGGTGCCCAGGGTCCTGCGGGAGAGCCGGATGGCGTCGGCCGCCGCCCGCAGGTCGCCGCGGACCAGGGTGAGGTCGCCGGCCTCGATGGCGGCGTCGGTGCCGGTGCCCATGGCCAGGCCCAGGTCGGCCTGGGCGAGCGCCGCGGCGTCGTTGACGCCGTCGCCGACCATGGCGACGCTGCGGCCCTCGGCCTGGAGCCGCTTGACCACGTCCACCTTGTCCTGGGGCAGCACCTCGGCGATGACCTCGTCGATGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3019-3230 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZU01000022.1 Streptomyces vitaminophilus strain ATCC 31673 Contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3019 29 100.0 32 ............................. CAGGCGGACGGCCCACGTGACCCGACGCCACC 3080 29 100.0 32 ............................. TTGATTGTTCACATACACCGACTCCTGTAGCC 3141 29 100.0 32 ............................. ACCGAGGCGGAACCGGGCGCTGGAATGATCGG 3202 29 93.1 0 ........................CC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCCGCGCCGGCACCGGCACTCGCCCCGGTCAACCTGATGTCGCTCCTCGGGCTGCGCCGGGCGCTGCGCGGTGCCCTGGTCGGGCACTTCGCCTTCCTCGAGGTCACCTCGTCGCCCGCCTCCCGCCGCCTCGCCGCGGCCATGAGACGCACCGGAGCCGGCCCGGCCGCCGAACACTTCTACACCGAGCACGTGGTGGCGGACGCCGTCCACGAACAGGTGGTCCGCCACGACGTGGTGGGCGGCCTGCTCGCGGACGAACCAGCACTCGCCCCCGACGTCACCTTCGGTGTCGCGGCCACCGCCATGCTGGAGGACCGGCTCGGTGACCACCTGCTGACGGCGTGGCGCACCGGCCACAGCGCACTGCGGGAGGACGCCCGGCACCCCGCCACCACCGACTGACGCCGGCCCCGCCGGCACGCTGGGCGTGTATGGTCGGTTCCGAGAAACTGTGCTCGCGGTGCTGCACGCTTGAGTGAAGCAGCAGGTCAGCGAGC # Right flank : CCGTTCCCCGCAGAGCGAGCGTTCCCCCGGCGTGCCCCCGAACTCCTGCACCGGCACCAGTGTGAACGCGTGCGCAGAGCCCTGCGGGGCGGGCGTGGGGGACCTCCCCGGCCGCCCGCCCCGAACGGCGGATGTTCACCGGCCGACCCGCCGACGGGTCACCGGAGTGGGGCCAAGTGTTCACGAAGCGCTCGTAGCGTCCGGGGCGCACCATCCGGAACCTCCCGGATGCCCCACAGAAGGACGCACCCATGCACCGCTTCCGTCTCGCCGCCGCCGCGCTCACGCTGAGCGTGGGCCTGCCCCTCGGTGTGGCTGCCGCTGTTCCGGCCTCCGCTGCCTCCGGCCCGATGGCGTTCGAACCGATCAAGAGCTCGGCCTACCAGCAGATGTCGGACACCTGGACCGTGCCGCTGGTCGCCCCCGAGGGCTTCACCCAGGAACTCGTCGCCGACGAGACCGTCCTGGACATCTACGGCGGCACCGCCGACGACCTCACC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2438-1362 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZU01000011.1 Streptomyces vitaminophilus strain ATCC 31673 Contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 2437 29 100.0 36 ............................. TGGCACGTCAGCACGCACCGGCGTGGCGGACGGCGT 2372 29 100.0 35 ............................. CGGTACTCGGCGTCGGCCGGGTCGCCGACGCGGAC 2308 29 100.0 34 ............................. TCAGCCATTGGGGGTCCTCTCGTCTCGGGCCGGG 2245 29 100.0 37 ............................. AGCATCGGCATCTGCACAACCCGCAGTGTCTCCTCCG 2179 29 100.0 37 ............................. GAGGGCCGCGGTGGCGCGCAGCGCCCCAGCGTCCTCG 2113 29 100.0 37 ............................. GGGTCCGCGCGGAACAGGCCGCGCGGATGCTCAGCAG 2047 29 100.0 36 ............................. GACGGCGACGCGGGATGCGGGTGCTCGTGCCCCACC 1982 29 100.0 34 ............................. GCTGTCACCGACACCTGGATGGGCGGCTGGGCCA 1919 29 100.0 36 ............................. CCGGTCTCAGACCGGTACGGCCTCGCCGCCGCCGCC 1854 29 96.6 30 ............................G AGTCAGGCATTGCTCCTCCGGGTGCCACAA 1795 29 100.0 36 ............................. AGCTCCGCGCCGCTCGCCCAGGTGGTGAGCTGCTGT 1730 29 96.6 35 ..T.......................... GCATCCTGCCCGGTCCACCCCTGGTCACGCTGGAA 1666 29 100.0 36 ............................. TTTGACGGCTCATCCCACACGAGCACAGACACGCTA 1601 29 100.0 47 ............................. TAGACCATGGTCATGCCGACCCGGTCGATGATGTAGTAGTTCCGGAA 1525 29 100.0 36 ............................. CCTTGTTCGTGCTACCACAGTGTCTGGGGATTCGCA 1460 29 96.6 41 ..................C.......... GCGGGGCGCGGTGACAGCGACACCGCGGCGGCCACCTGGCG 1390 29 79.3 0 .............T.......AGAA.G.. | ========== ====== ====== ====== ============================= =============================================== ================== 17 29 98.2 36 GTCCTCATCAGCCCTGGAGGGTTCGCAAC # Left flank : CACCACCGAGCACTCAAGCGCAAGGTCAGCTATGACGAGCTTCTGCACCTGGAGGCCTTGAAAATGGTTCGGTTGTGCCTGGAAGGAAGTCCCTACAAGCCGTTCCGCCCCTGGTGGTGACCCGACCTGTTTGCCATCCTCGTCTATGACACCGCCGTTGAGCGCAACCCGCGAGTGCTGCGCACCTGCCGCAAGTACCTGCACTGGGTACAGCGCAGTGTTTTCCAGGGGGAGCTCTCCGCTGCGCAGTACCGAGCCCTGTTGGCCGAGCTCAACAGCGTCATCGACCGCGACCAGGACAGCATCATGGCCTACGCCACAAGGTCTCCGGACATGGTCAACACTGCCTGCCTGGGCATCGTACTGGGCAACTCCAGCGATATCCTTTGACCCCGAGCCAAACCGTGCTGACCTGCGCTGATGCACAACCGGCGGATCGCCGCAAAATCGGCCGTGATCTCGAGCCACGAGATGGACGTGACCTGCGGCTTTACCATCGG # Right flank : CACTCACCTTGCGCGCGGCAGCGTACTCCGCAGTTCTCATCATCCTTCGCAACGCCAGGCCGAGGGCGGCGATGCCGCGCGGTGTGCCGGCGGCCGGCCGCAGGCAGCCCTTCTCGAGCCCGCACGGCACGGGAAGAGACCCACGCCGCTTATTACCTGGTCCTCGACGGCGCCCCCCGGATGTCAATCCTGCGCCCTGGACGTGAAGCGGAAGCCCCGGCTGGTGCAGCGGCGTGTGGCCCGTGACGGCCACGGCAGCTACGACTTCGGGTACTTCGGCACACCGGGTGGGAAGGGTGTCGATGTCGGCGAGGTGCTGCCCGGCCGGTACACCGTGCTTGTCTCCATGAGTACGGGAGGGGCCCTGTTCACCAAGGAGGTCTGCAGGAACACCCTCAAAGGGCGTTGACGGGGCACGCGGCCGGTGGTGGCAGCGGGCGGTCCAGGCCCCGAGCCAGGACGAGCAGGCCGGGCGGTCCCGGCCCCTAGCCAAGGTGAGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 11003-12324 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZU01000011.1 Streptomyces vitaminophilus strain ATCC 31673 Contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 11003 29 96.6 34 ...............A............. CTGCTCAACTGGGCGAGAACCGTAATGATTTCAA 11066 29 96.6 34 ...............A............. GCGCAGCCCCGGCAGCGCACCTCCAACTGAACCG 11129 29 96.6 36 ...............A............. CCACCCGTGTGCCGGCGCTTCCACGCGTCGATGATC 11194 29 96.6 34 ...............A............. AGGGCCAGCCCTAGGCTCGCGACCATGACGATGA 11257 29 96.6 36 ...............A............. CGTGCTGGAGATCCGCGACCCCTCCCCCGTCCTCGG 11322 29 96.6 36 ...............A............. CCGGGCCCCGGCCCGAGAAGAGTCCGGCACCACCAG 11387 29 96.6 37 ...............A............. AAATGGTCCCTGTACACCCGCATGTCCGGGTGCACGT 11453 29 100.0 33 ............................. CTGGCTCGCGCGCTTGAGCCCGACCGGGTGGCG 11515 29 100.0 39 ............................. CATTTCGCTGAGGCAAGTTCGGCATCCGCCGATTCCCCA 11583 29 100.0 34 ............................. GCGCCCCGGTGGTAGATGGTCAGGCGGTCCGCGA 11646 29 100.0 36 ............................. GTTGTCCTCACGCCGTACTGGCCCGGTCCGTTACCG 11711 29 100.0 36 ............................. ACTGAAGTAGAAGAGGGCACGGACGCGTACGGCGAG 11776 29 100.0 36 ............................. TGTTCCGCACGGTTGAACTTCTTCCGCTCCGCTTTC 11841 29 100.0 36 ............................. AGGAGCCGGGCGAGGATCTCCGCGTCCTGCTCGCCG 11906 29 100.0 38 ............................. GCGTTCACCAGACCGGTGCGGGACCGGCGAGGCGGCCG 11973 29 96.6 35 ..............C.............. ATGGTGGGCGACCTACCAACGATCGTCACCGAGTA 12037 29 100.0 36 ............................. GGGCTGATCGGCTGCCACCGGGTCGCCCTGCACGCC 12102 29 100.0 35 ............................. GGGATCAGGCGGGCCGCGCGGGCGGCGGACAAGGG 12166 29 96.6 36 ....C........................ AAGACCGTGACGAAGCTGGTCGCGGCCAGGCGTCTG 12231 29 100.0 36 ............................. AGACGCTGACCGAGCGGGTCCGCGACCGGGCCGCGC 12296 29 79.3 0 ...............AA....A...AGG. | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 97.6 36 GTCGTCATCAGCCCTGGAGGGTTCGCAAC # Left flank : AAGTCGTGCAGCCGCCGGGCCAACTCGGCGTTCTGGCTCCCCAGCAGCCCGTACACCACACCCTGAGCCGGGCCGTGGACCTGCTCCCAGGGAAGGCTCGACACATCGGCTGTCACATCCACCCTGACCCGCACGACTCCCCCTACCACCGCTCTAGCGCGACGCCGGCAGTGTTGCTTTTGAGTGTGATCACCAACGAGTCAGACCCTACGCGGGGAGGCCTGCGGCTACGCGACTTCTACGGAAAGTCATCGAGTGTGAACTTCGTGTGATATAGACCTGGGATGTTGGCGGATACCGCCACCGCCGCCACGGGGTTGAAGAGAAGGGTGGGGATAGTGAACGGGCTCCCTTCCGCCGGACGGCTCTGCGCGGGCGTCCCATCACGTTCTTCCCGCCGTACGCGTTTGACCTGCGATGTTGCACAACCGGCGGGTCGCCGCAGAATGCGCCTGGAGGTGCCCAGTTGGCCATGGTGTGACCTGCGGCTTTACCCTCGG # Right flank : CGGGGCGAACGCCCCCCGGGGGATCGCCGGCGACCCACGTCCCTTCCTCCCCCCAGCCCACCCACGAGGTAGCGAGTTGCATATTTCTGCAATTAGCTACATAGTGAGATAGTGAGCAATGCGGGGCGTGCCGAGGCGCCGTCCGTGAGTGAAGGGGGGCGCCCGTGGGCGGGGAGTTCGGCGCCGCGGTGCGGGAGCGGGTGCGCAGGGCGCGGCTGGCCTGGGAGGAAGCGGTCGGGGGCGGGGACGTCTTCGAGATCGCCGTCGCCCGGGGTGAGCTGGACGAGGCGCTGTGGGTGGCCCGGGAGCACGGGGTCGAGACCGGCCCCGAAAGGGGCGGGCGGTCCGCGGACGGGGTTGCCGACGAGGGCCTGGACGAGTAGGAGCTGAGGTACGGATGCCGGTGCCGTTGTACCAGGCGAAGGCGGAGTTCTTCCGGATGCTGGGGCACCCGGTGCGCATCAGGGTGCTGGAGCTGCTCCAGGGCGGGCCCATGGCGG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGAGGGTTCGCAAC # Alternate repeat : GTCGTCATCAGCCCTAGAGGGTTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //