Array 1 55219-54579 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X1419 NODE_1_length_390133_cov_76.360141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55218 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 55157 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 55096 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 55035 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 54974 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 54913 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 54852 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 54791 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 54730 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54669 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 54608 29 96.6 0 A............................ | A [54581] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72965-71351 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X1419 NODE_1_length_390133_cov_76.360141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72964 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 72903 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 72842 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 72781 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 72720 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 72659 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 72598 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 72537 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 72476 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 72415 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 72354 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 72293 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 72232 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 72171 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 72110 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 72049 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 71988 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 71927 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 71866 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 71805 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 71744 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 71683 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 71622 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 71561 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 71500 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 71439 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 71378 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //